Cloning of the Zygosaccharomyces bailii GAS 1 homologue and effect of cell wall engineering on protein secretory phenotype
- Simone Passolunghi†1,
- Luca Riboldi†1, 2,
- Laura Dato1,
- Danilo Porro1Email author and
- Paola Branduardi1
© Passolunghi et al; licensee BioMed Central Ltd. 2010
Received: 2 November 2009
Accepted: 26 January 2010
Published: 26 January 2010
Zygosaccharomyces bailii is a diploid budding yeast still poorly characterized, but widely recognised as tolerant to several stresses, most of which related to industrial processes of production. Because of that, it would be very interesting to develop its ability as a cell factory. Gas1p is a β-1,3-glucanosyltransglycosylase which plays an important role in cell wall construction and in determining its permeability. Cell wall defective mutants of Saccharomyces cerevisiae and Pichia pastoris, deleted in the GAS 1 gene, were reported as super-secretive. The aim of this study was the cloning and deletion of the GAS 1 homologue of Z. bailii and the evaluation of its deletion on recombinant protein secretion.
The GAS 1 homologue of Z. bailii was cloned by PCR, and when expressed in a S. cerevisiae GAS 1 null mutant was able to restore the parental phenotype. The respective Z. bailii Δgas 1 deleted strain was obtained by targeted deletion of both alleles of the ZbGAS 1 gene with deletion cassettes having flanking regions of ~400 bp. The morphological and physiological characterization of the Z. bailii null mutant resulted very similar to that of the corresponding S. cerevisiae mutant. As for S. cerevisiae, in the Z. bailii Δgas 1 the total amount of protein released in the medium was significantly higher. Moreover, three different heterologous proteins were expressed and secreted in said mutant. The amount of enzymatic activity found in the medium was almost doubled in the case of the Candida rugosa lipase CRL1 and of the Yarrowia lipolytica protease XPR2, while for human IL-1β secretion disruption had no relevant effect.
The data presented confirm that the engineering of the cell wall is an effective way to improve protein secretion in yeast. They also confirmed that Z. bailii is an interesting candidate, despite the knowledge of its genome and the tools for its manipulation still need to be improved. However, as already widely reported in literature, our data confirmed that an "always working" solution to the problems related to recombinant protein production can be hardly, if never, found; instead, manipulations have to be finely tuned for each specific product and/or combination of host cell and product.
The "non-conventional" yeast Zygosaccharomyces bailii has been proposed as a possible new player in biotech processes arena . Its tolerance to high sugar concentrations, low pH environments caused by organic acids, relatively high temperatures  could allow its growth under restrictive conditions. These features can be very useful for industrial fermentations because they can simplify the process, improving the economical value. In addition, the high specific growth rate of Z. bailii and its high biomass yield render this yeast particularly attractive for those applications were the biomass itself, or a specific protein or metabolite, is the desired product. In respect to recombinant protein production, it has been demonstrated that production and secretion levels of the recombinant human interleuchin-1β (rhIL-1β) and of fungal glucoamylases in Z. bailii are higher than the levels obtained with S. cerevisiae by the use of the same centromeric expression vector .
From an industrial point of view, production and secretion capabilities of the host systems currently in use are still insufficient. In particular, secretion of the heterologous protein often represents one of the main bottlenecks. Different strategies can be utilized in this respect, and among them are: improvement of the heterologous gene expression levels, signal sequence optimization, co-expression of chaperones and foldases, introduction of mutations which improve secretion capabilities and reduction of the proteolytic activity in secretion vesicles .
Since the yeast cell wall constitutes a physical barrier to large molecules transit, it represents one of the main limits for heterologous protein secretion. Thus, mutations which directly or indirectly alter the cell wall organization can lead to better secretion capabilities of a yeast host .
Mutations in genes involved in the construction and in the maintenance of the cell wall, such as PMR 1, SEC 14, ERD 1, MNN 9 and MNN 10, have in some cases been demonstrated to lead to supersecretive mutants in S. cerevisiae and other yeasts . The results evidence a tight correlation between glycosylation processes and protein secretion . It was hypothesized that this correlation is not directly linked to the heterologous secreted proteins, but rather to an altered structure of the glycosidic residues added to the cell wall (glycol)proteins , which in turn leads to an altered permeability of the cell wall itself.
Among the already mentioned target, also the inactivation of the GAS 1 gene, whose product is directly involved in the synthesis of the cell wall, led to a hypersecretive phenotype in S. cerevisiae. The Sc Gas1p is an extracellular glycoprotein, anchored to the cell membrane through a GPI tail, which has a β-1,3-glucanosyltransferase activity. This enzyme plays a central role in the formation of cell wall glucans: it catalyzes the crosslinking of the glucans resulting in the β-1,3-glucan elongation . The identification of Gas1p homologues in other yeast species and some pathogenic fungi led to the definition of a new glycosyl-hydrolases family. Recently, the hypothetical 3D structure of the catalytic domain of the protein was built by homology modelling . The GAS 1 gene disruption leads to peculiar morphological and physiological phenotypes due to an altered cell wall structure and composition. In particular, it was reported an altered distribution of the percentages of β-1,3- and β-1,6-glucans, the latter being higher than in wild type strain . It was also reported an increase in the chitin and mannoproteins levels, together with altered linkages between the different components . As a direct or indirect result of these cell wall structure modifications, the gas1 mutant shows higher secretion levels if compared to the wild type, both for total and for the heterologous recombinant proteins, as the human insuline-like growth factor (rhIGF1), . More recently, the Pichia pastoris GAS 1 homologous gene was cloned and then deleted, also resulting in a yeast mutant showing a supersecretive phenotype for some heterologous proteins, like a yeast lipase, but not for other, like the human trypsinogen .
Here we demonstrate that the deletion of the Z. bailii GAS 1 homologue leads to an improved heterologous protein secretion in this new promising host. For reaching this goal, the ZbGAS 1 gene was firstly cloned and then deleted thanks to the setting up of a protocol for gene deletion in this non-conventional diploid yeast. We describe here the morphological and physiological characterization of the Zb Δgas 1, which, in analogy to the Sc Δgas 1 and Pp Δgas 1 mutants, resulted to have a supersecretive phenotype.
PCR cloning for Z. bailii GAS 1 homologue
Because of the high phylogenetic correlation between Z. bailii and S. cerevisiae and because of the high percentage of identity among the few known Z. bailii and the corresponding S. cerevisiae gene sequences, our first attempt was to clone the gene homologous to GAS 1 in Z. bailii by PCR amplification, using primers designed on the 3' and 5' ends of the ScGAS 1 coding sequence, but with no success.
The 5' and 3' regions of the ZbGAS 1 homologue were subsequently amplified from a Genome Walker library constructed from the Z. bailii genomic DNA using the Universal GenomeWalker® Kit (Clontech). Gene-specific primers used were ZbGAS1 intREV and ZbGAS1 intFW for the 5' and 3' ends respectively (see Methods). The complete ORF of ZbGAS 1 was reconstructed in this way, and additional 262 bp upstream to the ATG and 177 bp after the STOP codon were also sequenced (GeneBank Accession N° GU136594).
Based on the new sequence, it was possible to design specific primers for the ZbGAS 1 gene (see Methods) and a DNA fragment of the expected length was amplified from the Z. bailii genomic DNA.
The complete ZbGAS 1 ORF resulted to be 1710 bp long (+ 30 bp vs ScGAS 1), sharing a 67% sequence identity with the S. cerevisiae homologue (additional file 1). This sequence encodes for a putative aminoacidic sequence of 569 aa (+10 aminoacids vs Sc Gas1p) having 68% identity with the Sc Gas1p protein (Figure 1). Sequence alignments were also performed between the newly isolated Z. bailii ORF and sequences of other homologous GAS genes in S. cerevisiae (GAS 1-5): the lower identity scores obtained for sequences other than ScGAS 1 (not shown) further indicated that we cloned the GAS 1 homologue of Z. bailii.
Hence, considering the sequence similarities between the ScGAS 1 gene and their homologues in other yeasts, the GAS 1 gene resulted to be highly conserved also in Z. bailii. The overall deduced protein structure seems to be also conserved.
The ZbGAS 1 gene is one of the few Z. bailii gene sequences isolated to date, hence representing a further little step towards the knowledge of this still poorly characterized yeast.
ZbGAS 1 gene disruption
Morphological and physiological characterization of the null mutant
The altered cell wall structure renders the deleted bakers' yeast strain more sensitive to sodium dodecyl sulphate (SDS) and to Calcofluor White (CFW), as reported in literature for the W303 background . Here we confirm by spot assays the sensitivity to both agents of the Sc Δgas 1 mutant, background BY4741 (Figure 3, upper right panels), and as well of the Zb Δgas 1 mutant (Figure 3, lower right panels).
Finally, to verify the functionality of the GAS 1 homologue of Z. bailii in S. cerevisiae and the similarity of its biological role, the ZbGAS 1 gene was expressed into the GAS 1-deficient S. cerevisiae strain, resulting in wild type phenotype restoration either in respect to the morphological traits as well as for the chitin distribution (data not shown). Moreover, to verify the functionality of the S. cerevisiae GAS 1 in Z. bailii, the ScGAS 1 gene was expressed into the GAS 1-deficient Z. bailii strain, also in this case restoring the native phenotype (data not shown).
Overall morphological and physiological data strongly indicate that the ZbGAS 1 gene may have a similar role, with respect to the ScGAS 1 homologous, in the assessment of the cell wall structure and, hence, their inactivation might have similar effects in the two yeasts in respect to secretion abilities.
Supersecretive phenotype of Δgas 1 strains
The data clearly underline the overall higher secretive capacity of Z. bailii if compared to S. cerevisiae, in accordance to heterologous proteins secretion data already reported . Moreover, they indicate a significant improvement in the secretive capability of the Z. bailii mutant, being nearly 80% more than the wild type in terms of total endogenous protein, similarly to the S. cerevisiae mutant.
Overexpression of CRL lipase, XPR2 protease and hIL-1β in Z. bailii Δgas 1 strains
With the intention to evaluate the potential effects of cell wall engineering and to test the secretive performance in the presence of an heterologous protein, three model proteins were tested: a fungal lipase from Candida rugosa (CRL1), a fungal protease from Yarrowia lipolytica (XPR2) and the human interleukin 1β (hIL-1β).
Similarly, three clones of Z. bailii Δgas 1 [pZLN022LIP 1] and three clones of the parental strain Z. bailii [pZLN022LIP 1], together with control clones harbouring the respective empty plasmid were pre-cultivated for 16 hours in shake flasks using YPD medium, and then transferred in shake flasks in minimal YNB-based medium containing 5% glucose. The amount of secreted recombinant LIP1 in culture supernatants was tested in terms of enzymatic activity after 24, 48, 72 and 120 h using the hydrolysis of p-nitrophenylesters method (see methods for detail). Also for this second heterologous product the Δgas 1 transformants showed a relevant increase in specific activity levels since 24 h (+35% at 24 h, more than two-fold at 120 h, see Figure 5b), in respect to wild type transformants.
Finally, three clones of Z. bailii Δgas 1 [pZ5Kl IL-1β] and three clones of the parental strain Z. bailii [pZ5Kl IL-1β], together with control clones harbouring the respective empty plasmid were tested for secretion level of the human interleukin, since the coding sequence was functionally linked to the signal peptide of the K1 killer toxin from K. lactis. The independent transformants were pre-cultivated and then cultured in shake flasks containing rich medium (YPD, 5% w/v glucose). Samples were collected at the indicated times (see Figure 5c), cells were harvested and both the supernatants and the cell protein extracts of said samples were loaded on a polyacrylamide gel. The data obtained by Western blot (see Figure 5c) performed on the supernatant showed a well represented band corresponding to the recombinant protein for both Z. bailii and Z. bailii Δgas 1 samples, but differently from the case of recombinant fungal enzymes, no relevant differences in favour of the deleted yeast are appreciable. Remarkably, the signal corresponding to the protein retained intracellularly is more intense in gas1 null mutant than the signal obtained from Z. bailii parental strain, indicating an incomplete secretion of this protein.
Cell wall engineering can improve the release of heterologous proteins from yeasts . Generally speaking, GAS 1, which mediates the crosslinking of cell wall components, is directly involved in defining the permeability of the cell. Cloning of the unknown Z. bailii GAS 1 homologue by PCR was only possible starting from highly conserved internal regions, identified upon alignment of the GAS 1 homologues of three yeast species. The 5' and 3' ends were subsequently amplified using a Genome Walker library. With this approach, the full-length Z. bailii GAS 1 homologue could be amplified and sequenced. The cloned gene was expressed in the GAS 1-deficient S. cerevisiae strain and reversion of the phenotype proved that this homologue is not only structurally but also functionally similar to the S. cerevisiae gene. Moreover, also the ScGAS 1 gene complemented the Z. bailii mutant. Disruption of GAS 1 in Z. bailii revealed its influence on the cell wall morphology. The GAS 1 null mutants of Z. bailii showed the same phenotype reported for S. cerevisiae, with enlarged cells often showing granular cytoplasm, an alterated chitin distribution, two buds (Mickey Mouse-like appearance) and big vacuoles. The vacuole is known to be a dynamic organelle whose morphology is highly responsive to different extracellular and intracellular stimuli/stressors . In the GAS 1 null mutant, it can be therefore speculated that the generation of big vacuoles is related to stressful conditions, as already suggested by the altered chitin distribution being a possible defence mechanism against lysis or related to a generalized response to sickness of the cells .
Finally, also the sensitivity to SDS and CFW appeared very similar to what observed in the S. cerevisiae mutant. A comparison of the different GAS 1 null phenotype mutants and the functionality of the Z. bailii GAS 1 homologue in S. cerevisiae suggest a similarity of the cell wall structure of Z. bailii compared with the cell wall structure of S. cerevisiae. Considering the secretory pathway of a secreted protein, it was speculated whether the protein becomes retarded in the cell wall after release from the plasma membrane. The disruption of GAS 1 in Z. bailii first of all confirmed a general phenomenon of protein release in respect to the wild type strain, as demonstrated by the higher accumulation of total protein in the growing medium of the deleted strain when compared to the parental strain. Moreover, such as compromised cell wall permeability in the production strains for XPR2 and LIP1 does lead to a clear improvement in the secretion of the respective proteins. In the case of h IL-1β the enhancement of product secretion was not so evident, and difficult to interpret in respect to the higher accumulation of intracellular product. It could be speculated that this can be related to the nature or to the source of the protein, but too few information are available at the moment to further comment in this direction. What seems to be true is unfortunately what we very often experience for recombinant protein production, which is the protein and protein-host dependence. In fact, also in P. pastoris two out of three heterologous proteins resulted more secreted in the mutant, as for Z. bailii, and when we tested the same protein, in particular the IL-1β secretion in the S. cerevisiae Δgas 1 mutant (data not shown), we did not register any improvement.
Yeast strains, media and transformation
The S. cerevisiae strains used in this study were the auxotrophic haploid BY4741 (Mat a, his3 Δ1, leu2 Δ0, met5 Δ0, ura3 Δ0) and the relative null mutant in GAS 1 sequence, called in this study, BY4741 Δgas 1 (Mat a, his3 Δ1, leu2 Δ0, met5 Δ0, ura3 Δ0, YMR307::kanMX4). Both strains are commercially available from Euroscarf collection http://web.uni-frankfurt.de/fb15/mikro/euroscarf/col_index.html. The Z. bailii wild type strain is ATCC60483. Yeast cultures were grown in YP medium (10 g l-1 yeast extract, 20 g l-1 peptone) with 2% or 5% w/v glucose (D) or fructose (F) as carbon source. Where needed, NAT (80 mg l-1) or G418 (500 mg l-1 for S. cerevisiae and 200 mg l-1 for Z. bailii) or hygromicine (100 mg l-1 for Z. bailii) were added to the media. Alternatively, yeast cultures were grown in minimal synthetic medium (0.67% w v-1 YNB Biolife without amino acids) with 2% or 5% w v-1 glucose as carbon source. When required, supplements such as histidine, leucine, methionine and uracil were added to a final concentration of 50 mg l-1. Media for plates were solidified by addition of agar (Biolife, Milan, Italy) to 1.5% w v-1. Shake flask experiments were carried out with 50 ml of medium in 250 ml shake flasks on a shaker at 30°C with 160 rpm. For sensitivity tests in Petri dishes 12.5 μg ml-1 of CFW or 50 μg ml-1 SDS were added to solid media. Yeast transformation was performed using the Lithium Acetate/ssDNA method as described  and slightly adapted for Z. bailii, as described .
Genes amplifications, deletion cassettes and expression plasmid construction
PCR amplifications were made from yeasts genomic DNA, prepared as described in . Amplifications were performed by the Pwo DNA Polymerase (Roche).
The amplification of the ZbGAS 1 gene was as follows: the primers GAS 1int_fw: 5'-AGT TGT TCC AGA GAT ATT CCA TAC CTC AA-3' and GAS 1int_rev: 5'-GCA GAA CCG CTG AAG CTA CAG T-3' designed on internal conserved region of the available sequences from other yeasts were firstly used to amplify an internal region of 1137 bp of the Z. bailii gene with the following program: 94°C 5 min; (94°C 15 s, 57°C 30 s, 72°C 1 min) × 25; 72°C 7 min; 4°C ∞. After that, the designed primers ZbGAS 1int_fw: 5'-GGA CGA TAA GGT TGA CGA AGA-3' and ZbGAS 1int_rev 5'-TGC TGT GGT CCA AAG TTG TG-3' were used for the amplification (program: 7 cycles: 94°C 2 min, 72°C 3 min; 32 cycles: 94°C 2 min, 67°C 3 min; 67°C 4 min; 4°C ∞) of the terminal ends of ZbGAS 1 utilizing a Z. bailii Genome Walker library constructed using the Universal Genome Walker kit (Clontech) following the manufacturers instructions. From the obtained and reconstructed sequence the final primers were established and used for the ZbGAS 1 1710 bp full length coding sequence amplification: ZbGAS 1_fw: 5'-ACT AAT GTT ATT CCA GGC GTT TTC G-3' and ZbGAS 1real_rev: 5'-AAA TCA AGC CAA AGC AAA TCC AGC A-3' (program: 94°C 5 min; (94°C 20 s, 58°C 30 s, 72°C 2 min) × 30; 72°C 10 min; 4°C ∞). The DNA sequence of ScGAS 1 was PCR amplified with the following primers: ScGAS 1fw: 5'-ACA ATG TTG TTT AAA TCC CTT TCA AAG TTA GCA A-3' and ScGAS 1rev: 5'-TTT TTA AAC CAA AGC AAA ACC GAC ACC AG-3' (program: 94°C 5 min; (94°C 20 s, 60.5°C 30 s, 72°C 2 min) × 30; 72°C 10 min; 4°C ∞), and the DNA sequence of YlXPR 2 was PCR amplified with the following primers: XPR 2_fwd: 5'-ACA ATG AAG CTC GCT ACC GCC TTT A-3' and XPR 2_rev: 5'-TGC CTA AAT GCC AAC ACC GTT GTA G-3' (program: 94°C 4 min; (94°C 15 s, 62.5°C 30 s, 72°C 2 min) × 30; 72°C 7 min; 4°C ∞). All the unique fragments obtained were sub-cloned in the vector pSTblue-1 utilising the Perfectly Blunt® Cloning Kit (Novagene) and sequenced. The resulting respective plasmids utilised in this work were named as follows: pSTbZb GAS1int, pSTbZb GAS1, pSTbSc GAS1 and pSTbYl XPR2.
For the construction of the ZbGAS 1 deletion cassettes, the KanR or the hphR cassette, derived from plasmid pFA6-KanMX4  and pAG26  and conferring resistance to G418 and hygromycin respectively, were bluntended excised and inserted in the pSTbZb GAS1int opened Bst EII Bgl II, bluntended and dephosphorylated, resulting in the plasmids pSTbZb GAS1ΔK and pSTbZb GAS1ΔH. The resistance cassettes resulted in both cases counter-clockwise inserted. The Z. bailii wild type cells were transformed with the respective deletion cassettes obtained by cutting the two described plasmids in the Acc I and Sna BI sites. The effective deletion was PCR checked by using the following couples of primers: ZbG1int2_fw 5'- TGC AGA AGT TAC AGA CCA ATG TTG T -3' and and ZbG1int2_rev 5'-AAG ATA GAG AAG TGC TCT TGG CA -3' (see Figure 2) or ZbG1int2_fw and Hph_fw 5'- ATA TGA AAA AGC CTG AAC TCA CCG AC -3' or Kan_fw 5'- ATG GGT AAG GAA AAG ACT CAC GTT -3' (not shown) in order to verify the presence of the cassettes in the desired locus.
For complementing the yeasts GAS 1 deletion, pZ5(-Nco)ScGAS1 and pYX022ZbGAS1 were constructed. pZ5(-Nco)ScGAS1 was obtained from pZ5(-Nco) opened Sac I/Eco RV with the insertion of ScGAS1, from pSTbScGAS1 cut with Sac I/Sna BI. The pZ5(-Nco) derives from pZ3 where at the Kpn I site the KanR cassette was substituted from the NATR cassette obtained from vector pAG25  by cutting Pvu II/Sac I/blunt (obtaining the pZ5 plasmid): finally this plasmid was Eco RI/Bam HI cut and bluntended and reclosed. pYX022ZbGAS1 was obtained with the insertion of ZbGAS 1 from pSTbZbGAS1 into pYX022 (R&D Systems, Wiesbaden, Germany) both Eco RI cut.
For heterologous protein expression the plasmids pZLN022XPR2, pZLN022LIP1 and pZ5Kl hIL-1β were constructed. The first two integrative plasmids derives from pZLN022 (manuscript in preparation), obtained from pYX022 opened Dra III blunt/Spe I blunt (to exclude HIS 3) with the insertion of ZbLEU 2 cut from pSTbZbLEU 2 with Eco RI blunt; in Kpn I blunt site the NATR cassette was inserted, obtained from vector pAG25  by cutting Pvu II/Sac I/blunt. The pSTbZbLEU 2 was obtained by sub-cloning ZbLEU 2 amplified by PCR from Z. bailii genomic DNA (manuscript in preparation) in pSTBlue (Novagen) cut by Eco RV. For pZLN022XPR2 construction, the pZLN022 was Aat II/Nhe I cut, and the XPR2 from pSTbXPR2 was inserted. For pZLN022LIP1 construction, the pZLN022 was Aat II blunt/Nhe I blunt opened and the LIP1 was inserted by Bam HI blunt/Nsi I blunt excision from the pGAPsLIP. For rh interleukin the pZ5Kl hIL-1β was built: it was obtained from pZ5 opened with Eco RI-blunt, with the insertion of hIL-1β in frame with Kl signal sequence from vector pKSSPI/3  cut Eco RI blunt/Xba I blunt.
DNA manipulations, transformation and cultivation of Escherichia coli (DH5αF' (φ80dlacZΔM15, Δ (lacZYA-argF), U169, deo, rec1, end1, sup44, λ, THI-1, gyrA96, relA1) and Novablue Competent Cells (Novagene) were performed following standard protocols . All the restriction and modification enzymes used were from New England Biolabs (Hitchin, Herts, UK) or from Roche Diagnostics (Mannheim, Germany).
Calcofluor staining and fluorescence microscopy
Cells were harvested, washed in PBS and resuspended in 1 mg ml-1 Calcofluor White solution, incubated 10-30 min at room temperature, washed again twice in PBS. Fluorescence microscope images were taken by a Nikon Eclipse 90i microscope using the Metamorph software version 2.2 (Nikon), using emission filter UV-1A.
Quantification of total released proteins
Cultures were harvested and centrifuged at maximal speed, then total proteins in the supernatants were ethanol-precipitated. The amount of proteins was determined by the dye-binding method of Bradford (Quick Start Bradford Dye Reagent - BIORAD), using BSA as standard. All the data were normalized by OD, after verification of the linear correlation between OD and dry weight as a measure of biomass.
Quantification of secreted protease
Cultures were harvested and centrifuged at maximal speed, then total proteins in the supernatants were separated and stored at -20°C until analysis. The amount of protease secreted in the medium was determined by the Azocoll assay (Azocoll - Calbiochem), using commercial protease as positive control. Azocoll assays were performed according to  with some modifications. Reaction mixtures contained 15 mg ml-1 Azocoll, 50 mM Tris/HCl (pH 7.6), 150 mM NaCl and 5 mM CaCl2. Proteolytic activities were measured by absorbance changes at 490 nm (Shimadzu UV 1601) after incubation for 18 h at 30°C.
Quantification of secreted lipase
Cultures were harvested and centrifuged at maximal speed, then the supernatants were separated and stored at -20°C until analysis. The amount of lipase secreted in the medium was determined according to  with some modifications. Reaction mixtures contained: (A) 60 mg of p-nitrophenyl palmitate (Sigma Aldrich) in 20 ml of isopropanol (Sigma Aldrich), (B) 1 g Triton X-100 (Sigma Aldrich) and 0.2 g of Arabic gum (Sigma Aldrich) in 200 ml Tris/HCl 0.1 M (pH 7.5). To obtain the mixture (C) add slowly 1 part of A solution to 9 part of B solution under continuous agitation. Add 9 part of (C) solution to one part of the enzyme containing solution (i.e. the supernatant). Lipase activities were measured by absorbance changes at 410 nm (Shimadzu UV 1601) and the amount of enzyme is proportional to OD according to the relation U/m = 0.667 × OD410 nm (if OD410 nm < 0.5).
Quantification of interleukin
Human IL-1β were analysed by Western blot. Independent transformants were cultured in shake flasks in minimal or rich medium and during the kinetics samples were collected. Cells were harvested (a culture volume corresponding to 108 cells) by centrifugation. One volume of 2×Laemmli buffer  was added to the supernatants of said samples, they were boiled for 3-5 min and stored at -20°C until loading, or loaded directly on a polyacrylamide gel. For the analysis of intracellular production, crude extracts were prepared from 108 cells by following the trichloroacetic acid protocol  and resuspending the final protein extract in 150 μl of Laemmli buffer. Samples were then loaded on standard polyacrylamide gels (sodium dodecyl sulfate-polyacrylamide gel electrophoresis, final concentration of the separating gel: 15%); after separation, proteins were blotted to nitrocellulose membranes and immunodecorated. An anti-IL-1β rabbit polyclonal antibody (IL-1β(H-153), Santa Cruz Biotechnology, USA; cat. no. sc-7884; dilution 1:200) was used for the interleukin immunodecoration. An anti-rabbit IgG horseradish peroxidase-conjugated (Amersham Pharmacia Biotech, UK cat no. NA934; dilution 1:10.000) secondary antibody was used. For the interleukin detection, as a positive control, the human recombinant IL-1β from E. coli (Roche cat. no. 1 457 756) was always loaded in parallel on the polyacrylamide gels. The proteins were visualised using the ECL Western blotting system (Amersham Biosciences, UK), according to the manufacturer's instructions.
Special thanks to Valeria Longo and Davide Zocco for technical contributions, and to Stefania Brocca for providing the pGAPsLIP plasmid. This work was partially supported by FAR 2007 and 2008 (12-1-192) to DP.
- Branduardi P: Molecular cloning and sequence analysis of the Zygosaccharomyces bailii HIS3 gene encoding the imidazole glycerolphosphate dehydratase. Yeast. 2002, 19 (13): 1165-1170. 10.1002/yea.907.View ArticleGoogle Scholar
- Thomas DS, Davenport RR: Zygosaccharomyces bailii - a profile of characteristics and spoilage activities. Food Microbiology. 1985, 2 (2): 157-169. 10.1016/S0740-0020(85)80008-3.View ArticleGoogle Scholar
- Branduardi P, Valli M, Brambilla L, Sauer M, Alberghina L, Porro D: The yeast Zygosaccharomyces bailii: a new host for heterologous protein production, secretion and for metabolic engineering applications. FEMS Yeast Res. 2004, 4 (4-5): 493-504. 10.1016/S1567-1356(03)00200-9.View ArticleGoogle Scholar
- Chow T, Ash J, Dignard D, Thomas D: Screening and identification of a gene, PSE-1, that affects protein secretion in Saccharomyces cerevisiae. J Cell Sci. 1992, 101 (Pt 3): 709-719.Google Scholar
- Bartkeviciūte D, Sasnauskas K: Disruption of the MNN10 gene enhances protein secretion in Kluyveromyces lactis and Saccharomyces cerevisiae. FEMS Yeast Res. 2004, 4 (8): 833-840. 10.1016/j.femsyr.2004.03.001.View ArticleGoogle Scholar
- Bankaitis V, Aitken J, Cleves A, Dowhan W: An essential role for a phospholipid transfer protein in yeast Golgi function. Nature. 1990, 347 (6293): 561-562. 10.1038/347561a0.View ArticleGoogle Scholar
- Vai M, Brambilla L, Orlandi I, Rota N, Ranzi B, Alberghina L, Porro D: Improved secretion of native human insulin-like growth factor 1 from gas1 mutant Saccharomyces cerevisiae cells. Appl Environ Microbiol. 2000, 66 (12): 5477-5479. 10.1128/AEM.66.12.5477-5479.2000.View ArticleGoogle Scholar
- Popolo L, Vai M: The Gas1 glycoprotein, a putative wall polymer cross-linker. Biochim Biophys Acta. 1999, 1426 (2): 385-400.View ArticleGoogle Scholar
- Papaleo E, Fantucci P, Vai M, De Gioia L: Three-dimensional structure of the catalytic domain of the yeast beta-(1,3)-glucan transferase Gas1: a molecular modeling investigation. J Mol Model. 2006, 12 (2): 237-248. 10.1007/s00894-005-0025-7.View ArticleGoogle Scholar
- Popolo L, Vai M, Gatti E, Porello S, Bonfante P, Balestrini R, Alberghina L: Physiological analysis of mutants indicates involvement of the Saccharomyces cerevisiae GPI-anchored protein gp115 in morphogenesis and cell separation. J Bacteriol. 1993, 175 (7): 1879-1885.Google Scholar
- Kapteyn J, Ram A, Groos E, Kollar R, Montijn R, Ende Van Den H, Llobell A, Cabib E, Klis F: Altered extent of cross-linking of beta1,6-glucosylated mannoproteins to chitin in Saccharomyces cerevisiae mutants with reduced cell wall beta1,3-glucan content. J Bacteriol. 1997, 179 (20): 6279-6284.Google Scholar
- Marx H, Sauer M, Resina D, Vai M, Porro D, Valero F, Ferrer P, Mattanovich D: Cloning, disruption and protein secretory phenotype of the GAS1 homologue of Pichia pastoris. FEMS Microbiol Lett. 2006, 264 (1): 40-47. 10.1111/j.1574-6968.2006.00427.x.View ArticleGoogle Scholar
- James S, Collins M, Roberts I: Genetic interrelationship among species of the genus Zygosaccharomyces as revealed by small-subunit rRNA gene sequences. Yeast. 1994, 10 (7): 871-881. 10.1002/yea.320100703.View ArticleGoogle Scholar
- Mollapour M, Piper P: Targeted gene deletion in Zygosaccharomyces bailii. Yeast. 2001, 18 (2): 173-186. 10.1002/1097-0061(20010130)18:2<173::AID-YEA663>3.0.CO;2-F.View ArticleGoogle Scholar
- Popolo L, Gilardelli D, Bonfante P, Vai M: Increase in chitin as an essential response to defects in assembly of cell wall polymers in the ggp1delta mutant of Saccharomyces cerevisiae. J Bacteriol. 1997, 179 (2): 463-469.Google Scholar
- Carotti C, Ferrario L, Roncero C, Valdivieso M, Duran A, Popolo L: Maintenance of cell integrity in the gas1 mutant of Saccharomyces cerevisiae requires the Chs3p-targeting and activation pathway and involves an unusual Chs3p localization. Yeast. 2002, 19 (13): 1113-1124. 10.1002/yea.905.View ArticleGoogle Scholar
- Turchini A, Ferrario L, Popolo L: Increase of external osmolarity reduces morphogenetic defects and accumulation of chitin in a gas1 mutant of Saccharomyces cerevisiae. J Bacteriol. 2000, 182 (4): 1167-1171. 10.1128/JB.182.4.1167-1171.2000.View ArticleGoogle Scholar
- Ferrer P, Diers I, Asenjo J, Andrews B: Yeast cell permeabilizing beta-1,3-glucanases: A tool for the integration of downstream processes and metabolic engineering applications to yeast. Biotechnol Bioeng. 1998, 58 (2-3): 321-324. 10.1002/(SICI)1097-0290(19980420)58:2/3<321::AID-BIT32>3.0.CO;2-C.View ArticleGoogle Scholar
- Li S, Kane P: The yeast lysosome-like vacuole: endpoint and crossroads. Biochim Biophys Acta. 2009, 1793 (4): 650-663. 10.1016/j.bbamcr.2008.08.003.View ArticleGoogle Scholar
- Gietz R, Woods R: Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol. 2002, 350: 87-96. full_text.View ArticleGoogle Scholar
- Hoffman C, Winston F: A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene. 1987, 57 (2-3): 267-272. 10.1016/0378-1119(87)90131-4.View ArticleGoogle Scholar
- Wach A, Brachat A, Pöhlmann R, Philippsen P: New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast. 1994, 10 (13): 1793-1808. 10.1002/yea.320101310.View ArticleGoogle Scholar
- Goldstein A, McCusker J: Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast. 1999, 15 (14): 1541-1553. 10.1002/(SICI)1097-0061(199910)15:14<1541::AID-YEA476>3.0.CO;2-K.View ArticleGoogle Scholar
- Brocca S, Schmidt-Dannert C, Lotti M, Alberghina L, Schmid R: Design, total synthesis, and functional overexpression of the Candida rugosa lip1 gene coding for a major industrial lipase. Protein Sci. 1998, 7 (6): 1415-1422. 10.1002/pro.5560070618.View ArticleGoogle Scholar
- Camattari A, Bianchi M, Branduardi P, Porro D, Brambilla L: Induction by hypoxia of heterologous-protein production with the KlPDC1 promoter in yeasts. Appl Environ Microbiol. 2007, 73 (3): 922-929. 10.1128/AEM.01764-06.View ArticleGoogle Scholar
- Sambrook J, Maniatis T, Fritsch EF: Molecular cloning: a laboratory manual. 1989, Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory, 2Google Scholar
- Chavira RJ, Burnett T, Hageman J: Assaying proteinases with azocoll. Anal Biochem. 1984, 136 (2): 446-450. 10.1016/0003-2697(84)90242-2.View ArticleGoogle Scholar
- Brocca S, Persson M, Wehtje E, Adlercreutz P, Alberghina L, Lotti M: Mutants provide evidence of the importance of glycosydic chains in the activation of lipase 1 from Candida rugosa. Protein Sci. 2000, 9 (5): 985-990. 10.1110/ps.9.5.985.View ArticleGoogle Scholar
- Laemmli U: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970, 227 (5259): 680-685. 10.1038/227680a0.View ArticleGoogle Scholar
- Surana U, Amon A, Dowzer C, McGrew J, Byers B, Nasmyth K: Destruction of the CDC28/CLB mitotic kinase is not required for the metaphase to anaphase transition in budding yeast. EMBO J. 1993, 12 (5): 1969-1978.Google Scholar
- Waterhouse A, Procter J, Martin D, Clamp M, Barton G: Jalview Version 2--a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009, 25 (9): 1189-1191. 10.1093/bioinformatics/btp033.View ArticleGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.