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Bacterial polyextremotolerant bioemulsifiers from arid soils improve water retention capacity and humidity uptake in sandy soil
Microbial Cell Factories volume 17, Article number: 83 (2018)
Water stress is a critical issue for plant growth in arid sandy soils. Here, we aimed to select bacteria producing polyextremotolerant surface-active compounds capable of improving water retention and humidity uptake in sandy soils.
From Tunisian desert and saline systems, we selected eleven isolates able to highly emulsify different organic solvents. The bioemulsifying activities were stable with 30% NaCl, at 4 and 120 °C and in a pH range 4–12. Applications to a sandy soil of the partially purified surface-active compounds improved soil water retention up to 314.3% compared to untreated soil. Similarly, after 36 h of incubation, the humidity uptake rate of treated sandy soil was up to 607.7% higher than untreated controls.
Overall, results revealed that polyextremotolerant bioemulsifiers of bacteria from arid and desert soils represent potential sources to develop new natural soil-wetting agents for improving water retention in arid soils.
Biosurfactants (BS) are amphipathic compounds produced by a variety of microorganisms. They can be low-molecular weight, generally glycolipids or lipopeptides, or high-molecular weight compounds, which are mainly lipopolysaccharides, lipoproteins, or a combination of both. The high-molecular weight BS, also called bioemulsifiers (BE), are capable of producing stable emulsions, but do not always determine decreases of surface or interfacial tensions . There is a growing interest in microbial biosurfactants owing to several advantages over conventional surfactants, including biodegradability, low toxicity and production from renewable substrates [2,3,4].
BE and BS are used in agriculture for several applications ranging from the improvement of the quality of polluted soils, to the control of plant pathogens or for favoring plant–microbe interactions . The potential of exopolysaccharides (EPS) with bioemulsifying properties have been considered for the promotion of plant growth by bacterial producers [6, 7] or for their effect on the hydrological behavior of biological soil crusts . Application of surfactants to soil has been included among twelve strategies for the remediation of soil water repellency , even though the effect of biosurfactants on soil water repellency are controversial. Some studies have reported that fungi may produce hydrophobins that favor the development of water repellency .
One aspect that, to our knowledge, has not been considered in the literature on BS/BE is their potential for improving soil water retention , especially in arid and desert sandy soils that have limited content of organic matter and experience extreme environmental conditions of limited water supply and nutrient content, high temperatures, irradiation and evaporation rates and high salinity [11, 12].
We hypothesize that, by living under extreme conditions, bacteria in arid and desert soils should have evolved capacities and strategies that allow an efficient use of water, including production of BS/BE highly stable under extreme conditions of temperature and irradiation and that can facilitate access/retention of low-available water and nutrients. On the plant leaf surface that experiences analogous extremes such as those in desert sandy soils , epiphytic bacteria have been reported to exploit biosurfactants to increase wettability of the leaf and to enhance nutrients diffusion through the wax cuticle . Similarly, bacteria inhabiting arid environments and especially sandy soils could take advantage from BS/BE to access limited nutrient supplies and withstand fluctuations in moisture availability in a water-deficient environment.
In this study, we have screened a collection of bacteria from arid Tunisian soils including (i) an inland saline system and sand from the Sahara desert and (ii) an arid vineyard in the North of the country, for BS/BE activities under different conditions. We have also tested a subgroup of selected BS/BE bacterial isolates for their potential to improve water retention and humidity uptake in sandy soils.
The 24 bacterial isolates used in this study include 23 strains obtained from sediment samples recovered from the inland saline system Chott El Fejej and desert sand from Douz in the South of Tunisia (Additional file 1: Table S1); and one (V3E1) isolated from the root system of grapevine plants growing in an arid soil of Northern Tunisia (Mornag area). The strains were identified based on partial 16S rRNA gene sequences (database accession numbers MG594617-MG594638 and MG637030).
Screening for biosurfactant/bioemulsifier production
Cells were inoculated into glucose mineral salts medium (GMSM) (g/L: 20.0 glucose; 0.7 KH2PO4; 0.9 Na2HPO4; 2.0 NaNO3; 0.4 MgSO4·7H2O; 0.1 CaCl2·2H2O; 2 mL of trace elements [per liter, 2.0 g FeSO4·7H2O, 1.5 g MnSO4·H2O, 0.6 g (NH4)6Mo7O24·4H2O]; pH = 6.72). The flasks were incubated at 30 °C on a rotary shaker (150 rpm). The surface activity of cell-free supernatants was tested on culture samples every 24 h for a period of up to 4 days. The cell-free culture supernatants recovered by centrifugation (10,000 rpm, 10 min, 4 °C) followed by filter-sterilization (0.22 µm) were used for evaluation of the surface activity by determining the emulsification index and the drop collapse activity as well as by measuring the interfacial surface tension (IFT).
The emulsification activity (EA) of the supernatant was determined as follows. Two milliliters of culture supernatant and an equal volume of the tested organic solvent (n-hexane, n-hexadecane or toluene) were placed in a test tube that was vortexed at high speed for 2 min and then allowed to settle for 24 h. The emulsification index (EI24%) was estimated as the height of the emulsion layer, divided by the total height, multiplied by 100.
The surface qualitative drop collapse activity test was carried out as follows: 40 µL of the cell free supernatant was aliquoted as a droplet onto Parafilm® (Parafilm M, Germany); the flattening and the spreading of the droplet on the Parafilm® surface was followed over 10 min and recorded by visual inspection. The assay was scored negative or positive if the drop remained beaded or collapsed, respectively.
The IFT of the cell-free culture supernatant was measured with a Drop Shape Analyzer—DSA30 (KRUSS GmbH, Germany) working in the pendant drop mode. The drops were produced by a syringe equipped with a 2.098 mm needle diameter, were left to equilibrate close to the rupture point and IFT values (mN/m) were calculated by the instrument software using the Young–Laplace equation:
where ∆p is the differential pressure between the inside and outside of the drop, σ is the IFT value and r1 and r2 are the main radii of the drop curvature. Measurements were performed at room temperature, at least in triplicates. A Tween 80 solution at a final concentration of 0.5%w/v (in water), was used as positive control while deionized water and non-inoculated growth medium with 2%w/v glucose were used as negative controls. All screening assays were performed in duplicate as independent experiments.
Stability of bioemulsifiers
Emulsion stability studies were performed using cell-free culture supernatants. The stability of the bioemulsifiers activity was determined by investigating the effect of varying NaCl concentration, temperature or pH on the EA. In order to assess the effect of salinity on the bioemulsifier activity, culture supernatants were supplemented with different NaCl concentrations (8–30%w/v) and the emulsifying activity was measured as described above. To evaluate the stability of the bioemulsifier at different temperatures, culture supernatants were subjected to cooling (4 °C, 2 h), heating (55 °C, 2 h) or autoclaving (121 °C for 20 min) followed by cooling to room temperature before performing the EI assay. The measured emulsification indexes were compared to the corresponding values obtained using culture supernatants not subjected to the different treatments. The EA of hexadecane was not evaluated at 4 °C since the melting point of the solvent was of 18 °C and hence at lower temperature the emulsion was subjected to solidification. The pH stability was studied by adjusting the cell-free culture supernatants to different pH values (4–12) using HCl or NaOH solutions, and then the EA was measured as previously described. Furthermore, the stability of the emulsions produced under the different conditions was monitored for up to 30 months.
All the experiments were carried out in duplicate. The results were reported as residual emulsification activity (REA) percentage (%) expressed as follows:
where EIt and EI24 are the EI (%) values at incubation time t and after 24 h, respectively; and compared with those obtained with the positive control.
Water retention and moisture uptake assays by a sandy soil
For BS/BE production, selected bacterial strains were grown in GMSM and incubated at 30 °C. Cells were removed by centrifugation (8000 rpm, 10 min, 4 °C) and the collected supernatant was acidified with 6 N hydrochloric acid solution to pH 2.0 ± 0.3. The precipitate which contained BS/BE was allowed to settle at 4 °C overnight. The precipitated BS/BE were collected by centrifugation (12,000 rpm, 20 min, 4 °C) and resuspended in sterile tap water at a final concentration of 25 g/L. Triton X-100 applied at a final concentration corresponding to its CMC (0.14 g/L) and sterilized tap water were used as controls. Before using in the experiments, the sandy soil sample was oven-dried (105 °C, 4 h) and subjected to sterilization by tyndallization followed by drying (55 °C, overnight) and acclimated at 30 °C for 24 h.
The water retention assay was performed as follows: 10 g of sandy soil were placed in a glass Petri dish in duplicate and subjected to wetting with 10 ml of a solution of BS/BE to be tested or tap water, followed by drying at 30 °C until a constant weight was achieved. The samples have been thoroughly mixed manually and then subjected to two cycles of irrigation with 2.5 mL sterilized tap water and drying until constant weight was achieved. During the first drying cycle, each sample was weighed immediately after irrigation with tap water and every 60 min up to 12.5 h of incubation and then each 12 h until constant weight was achieved. Monitoring of the samples weight after the second irrigation was performed at the time of irrigation, after 12.5 h of incubation and then every 60 min until complete drying.
The moisture uptake assay was performed by incubating the Petri dishes containing 10 g of dried sandy soil samples in a sealed desiccator, in which the dishes were placed on the platform and the space under the platform was filled with tap water instead of desiccant in order to create a high (100%) relative humidity in the environment. After 36 h of incubation at constant temperature (30 °C), the samples were weighed in order to evaluate their weight increase due to humidity uptake.
Data related to the evaluation of bioemulsifiers stability under stressful conditions and to water retention and moisture uptake assays were statistically assessed using the analysis of variance (ANOVA) via MATLAB software (Version R2017a, The MathWorks Inc, Natick, USA). The statistical analyses aimed to highlight the statistically significant differences among EI24% values obtained under standard and stressful conditions, and among the amounts of retained water and uptaken humidity by sandy soil samples treated with the bioemulsifiers solutions, Triton X-100 or tap water. The significance of the data was determined by Tukey honestly significant different test. Statistically significant results were depicted by p values < 0.05.
Results and discussion
Screening of surface-active strains and their identification
Among the 23 isolates screened (Additional file1: Table S1, Additional file2: Figure S1), 9 were capable to significantly emulsify (EI24% > 45%) at least one of the solvents tested (Table 1). On the basis of the partial 16S rRNA gene sequences, all isolates had between 99 and 100% sequence similarities with their closest relative type strain in the databases (Table 1). Bacillus mojavensis IFO15718 isolated from Mojave desert [15, 16] was the closest relative species of the R4p, R43 and R39 strains, while Bacillus endophyticus strain 2DT isolated from the inner tissues of cotton plants  was the closest relative of L45, L97b and L37 isolates. The partial 16S rRNA gene sequence from strain N3 showed 99% homology with different B. subtilis including the subsp. spizizenii TU-B-10 isolated from soil collected near Nefta, Tunisia . Bacillus licheniformis strain DSM 13 was the closest relative of L98 strain, and Bacillus frigoritolerans DSM 8801 isolated from arid soil in Morocco was that of R55 and R40 strains. The last isolate among those obtained from chott and that is positive for BS/BE production was previously classified as Paenibacillus tarimensis (strain L88) , while the grapevine rhizosphere isolate V3E1was assigned to Rhizobium sp..
The eleven desert/chott isolates capable of producing BS/BE were spore-formers, a group of bacteria well adapted to the arid conditions of the desert primarily for their capacity to produce spores that are resistant to heating, desiccation and irradiation . Several of the strains were affiliated to species previously isolated from soil and sand from other desert ecosystems, such as Bacillus mojavensis  and Paenibacillus tarimensis .
Even though it should be confirmed by a larger range of isolates and ecosystems, it can be noted that comparing the bacterial BS/BE producers with the initial collection of isolates (Additional file1: Table S1), almost all of them (10 out of 11) belong to the genus Bacillus. This observation suggests that that BS/BE activities are important features in the Bacillus genus for the adaptation to arid conditions.
The maximum emulsifying activity was recorded between 24 and 96 h of incubation. The significant highest emulsification index was observed using hexadecane as solvent (61.11 ± 1.92% by Bacillus endophyticus L37; Table 1). Cell-free culture supernatants of four isolates (Bacillus sp. isolate N3, Bacillus sp. isolates R4p, R39 and R43) significantly decreased the medium surface tension from 74.66 ± 0.21 mN/m, with a lowest value of 28.36 ± 0.63 mN/m (Table 1). These results suggest that under these experimental conditions, most of the isolates (8 out of 11) produced BE since their culture supernatants did not exhibit a remarkable surface tension reduction but were able to highly emulsify the tested organic solvents. Indeed, the formation of emulsions is typical of BE while BS are the compounds that are able to significantly reduce the surface tension of aqueous media to around 40 mN/m [14, 22].
Bacillus spp. are well known BS/BE producers and their applications were related to hydrocarbon (crude oil) degradation and microbial enhanced oil recovery [23,24,25]. Among others, B. endophyticus isolate TSH42 was reported to produce surfactin, fengycin and iturin lipopeptides that exhibit fungal biocontrol activity ; however their ability to reduce the growth medium surface tension or to emulsify organic solvents has not been evaluated previously. B. mojavensis has been previously studied for lipopeptide biosurfactant production  but not for bioemulsification activities. B. licheniformis was the only one previously characterized for its production of lipopeptide biosurfactants capable to reduce the medium surface tension to 28 mN/m  and to determine bioemulsification activity [24, 25]. Interestingly, while Paenibacillus sp. isolates have been previously studied for their BS/BE production and activity [29,30,31,32], no data regarding B. frigoritolerans were available in literature.
Stability of bioemulsifiers
Based on BS/BE activities, ten bioemulsifying isolates were selected and the stability of their EA was evaluated under different conditions. The activity of the crude BEs was evaluated from cell-free culture supernatants after exposure to low water activity conditions as well as to extremes of pH or temperature (Figs. 1, 2, 3). In presence of toluene under standard conditions, six of the isolates (L37, L45, L97b, R4p, R40 and R55) did not exhibit a statistically significant decrease of their BE activity compared to the positive control (Tween 80, Fig. 1a), while EI24 (%) of the remaining isolates (L88, L98, N3 and R43) were significantly reduced. Different trends were observed when salt stresses were applied to the solution. With the increase of NaCl concentration (up to 30%), only five isolates (L37, L45, L88, N3 and R55) showed EI24 values statistically comparable to those obtained under standard conditions, suggesting how stress can strongly affect the activity of bacterial BEs. Remarkably, while the EA24 was significantly reduced for the strains R40 and L97b, it was completely lost for R4p, L98 and R43 (Fig. 1a).
When the stress applied was determined by extreme pH (4 and 12), a different scenario was observed (Fig. 1b). Under these conditions, no significant changes in EA24 values were reported for L45, L97b, R55, N3, R4p and L37, as well as for the positive control (Tween 80), compared to standard conditions. The toluene EA by culture supernatant of isolate P. tarimensis L88 was significantly enhanced at pH 4, while remained statistically equivalent to standard conditions at pH 12. On the contrary, a significant EA24 reduction/loss was recorded for isolates R40 (pH 4 and pH 12), R43 (pH 12) and L98 (pH 4) (Fig. 1b). With the exception of isolates N3, R43 and R40, all the remaining cell-free culture supernatants retained EA24 at low temperature (4 °C), which were statistically identical to that of Tween 80 (Fig. 1c). When the temperature was increased to 55 °C, isolates L97b, L88, L98, R4p, R55 and L45 showed EA24 comparable to the corresponding standard conditions and to Tween 80, while a reduction/loss of activity was recorded for strains L37, R40, N3 and R43 (Fig. 1c). After autoclaving, the cell-free culture supernatants of the tested isolates retained an EA24 unchanged compared to their corresponding activities under standard conditions; except for strains N3, R40, L88, R4p and R43 (Fig. 1c).
Bacterial BEs acted in a completely different way when hexane was used as solvent (Fig. 2a–c). In the presence of salt stress (15%), a significant reduction of bacterial BEs performances was observed, except for isolates L37 and L45 that showed EI24 values statistically comparable to the corresponding activities under standard conditions, as well as to that of Tween 80 with 15% NaCl. Reaching the maximum salt stress tested (30%), a total absence of activity was recorded for all the culture supernatants as well as for Tween 80 (Fig. 2a). In the presence of a lower NaCl concentration (8%) the hexane EA24 was maintained statistically unchanged compared to the standard conditions for Tween 80 and strains L37, L45, L97b, R4p and R55; while it was completely lost for R43 and L98 and significantly reduced for the remaining isolates (L88, N3, R40). Considering pH as stressful condition, under acidic conditions EA24 was significantly reduced for isolates R40 and R55 with a complete loss for strain L98 at pH 4 (Fig. 2b). In general, alkaline pH did not affect EA24 with the exception of the strain R40 (Fig. 2b). Looking to the temperature, also in this case for some strains the autoclaving procedure resulted in a reduction (N3, R4p) or complete loss (L88 and R40) of the EA24. The incubation at 55 °C resulted in a significant reduction of EA24 for the isolates L37, L88, R40 and R55 and a complete loss for N3 and R43, while the activity remained statistically stable for the other strains. The reduction of EA24 at 55 °C (although it was stable at higher temperature, i.e., to autoclaving), for example in the case of isolates L37, R43 and R55, could be ascribable to partial degradation of the bioemulsifiers as a result of the activation of extracellular hydrolytic enzymes (for example proteases and/or lipases) present in the culture supernatant of these isolates. Indeed, the cell free culture supernatants were pre-heated and further incubated at 55 °C once the organic solvents to be tested were added, which could has led the bioemulsifier polymeric compounds degradation. The activity of extracellular hydrolytic enzymes at relatively high temperature (55 °C) can be expected considering the origin of the isolates from a hot desert. On the contrary, a low temperature (4 °C) reduced EA24 of R55, R40 and N3 but did not affect that of the Tween 80 or the remaining strains (Fig. 2c).
The stability of the emulsification activity in hexadecane under stressful conditions was evaluated only for isolates exhibiting a significant stability in hexane and toluene solvents (L37, L45, L88, L97b, R4p and R55) as reported in Fig. 3a–c. The presence of different salt concentrations affected significantly the EA24 of strains L97b and R55 (Fig. 3a). Extreme pHs and temperature treatments significantly affected bacterial BEs performance in the case of L97b (pH 4), R55 (pH 4, 55 °C, autoclaving), R4p (55 °C, autoclaving), L37 and L88 (pH 12, 55 °C, autoclaving), up to complete EA24 loss in the case of strains L37, L88 and R4p at 55 °C and strains L88 and R4p after autoclaving (Fig. 3b, c).
Gutiérrez et al.  reported that heat (100 °C) and acid treatment (0.1 N) increased the relative activity of the bioemulsifiers produced by Halomonas sp. Activity increment was explained by a heating activation of polymeric emulsifiers releasing a higher number of emulsifying moieties from the biopolymers, enhancing the emulsifying capacity.
BEs not affected by salt stress (i.e. NaCl concentrations up to 300 g/L) and extremes of pH (2–13) have been previously described from Paenibacillus sp. #510  as well as from marine Bacillus sp., Halomonas sp. and Marinobacter sp. . Dubey et al.  reported that bioemulsifiers from Pseudomonas aeruginosa strain-PP2 and Kocuria turfanesis strain-J retained their activities at up to 20% NaCl and 121 °C. Marine Rhodococcus sp. has been reported to produce trehalolipid biosurfactant that formed emulsions stable to a wide range of temperatures (20–100 °C), pH (2–10) and NaCl concentrations (5–25%w/v) , and bioemulsifiers highly stable at low water activity and temperature extremes were reported from Marinobacter sp. . EIs relatively stable under extreme pH, temperature, and salinity conditions have been previously reported from Bacillus spp. [23,24,25, 28].
The long-term stability of emulsions (reported as residual emulsification activity %) under standard screening conditions or after exposure to water, heat or extreme pH stresses was evaluated after a monitoring period of up to 30 months. The emulsions showed a high stability at room temperature, maintaining up to 100% of the initial EIs under standard conditions (Table 2), while different responses have been observed under the different stresses applied (Tables 3, 4, 5). Interestingly, some strains were able to retain unchanged activity in the presence of up to 15% NaCl (strain L45; Table 3), under acid/alkaline pHs (strains L45, L97b, R40 and R55; Table 4) and at 4 °C or after autoclaving (strains L45 and R55, respectively; Table 5).
Long-term EI stabilities have been previously observed for the bioemulsifiers produced by Pedobacter sp. strain MCC-Z where the emulsions remained stable for 4 months . Extended stability for longer incubation times (18–30 months) under low water activity or after thermal treatments was also observed for bioemulsifiers produced by Marinobacter sp. isolates , while no reports on long period incubation under pH extremes are available to the best of our knowledge.
Water retention and humidity uptake by a BS/BE-treated sandy soil
Based on the characterization of the surface activity of the produced bacterial compounds two isolates (L45 and R43) were selected for further tests. While L45 produced only BEs, R43 was able to produce BEs that significantly reduced IFT but exhibited low emulsification activity. Their BS/BEs were used for testing their ability to improve water content and humidity uptake of sandy soil. An additional strain, V3E1 isolated from arid agricultural soil, was also used. The isolate V3E1 was included in the study since it has been shown to produce extracellular polymeric substances (EPS), and based on literature reports EPS have been found to play an important role in water retention in biological soil crusts . The isolate produced surface-active compounds that were able to reduce the surface tension of the cultivation medium up to 69.81 ± 0.88 mN/m and to emulsify the different solvents used exhibiting EI24 (%) of 55.93 ± 5.76; 5.00 ± 2.36 and 11.67 ± 2.36 for toluene, hexane and hexadecane, respectively.
The water retention capacity of sandy soils treated with BS/BE solutions was monitored after two irrigation events using sterilized tap water. No significant differences between the treatments were observed during the first ten hours of monitoring, after the start of the first irrigation (Fig. 4a). Based on this, a second irrigation treatment was performed and new measurements were carried out (Fig. 4b). Statistical analyses showed that after 12.5 h, compared to control (not subjected to BS/BE treatment) which retained only 9.1 ± 0.9% (Fig. 4b), Triton X-100, R43, L45 and V3E1-treated sandy soil samples significantly reduced water evaporation retaining 16.3 ± 0.8; 19.0 ± 0.1; 27.0 ± 3.5 and 28.6 ± 1.2% of the initial water, respectively. Hence, comparing the data obtained we can show that after 12 h bacterial BS/BE significantly increased water retention, with values up to 314.3% (V3E1) higher than the untreated control. This capability to retain a significantly higher water amount, compared to control, was statistically confirmed also during the two following hours. However, after 16 h, samples irrigated with Triton X-100, R43 and water were found to loose almost completely their water content (Fig. 4). Those irrigated with L45 or V3E1 BS/BE still retained a significantly higher amount (6.2 ± 2.4 and 8.2 ± 0.0%, respectively) of the initial water, confirming the BS/BE capacity to improve water retention in sandy soil. All the samples lost their water content after 18 h from the start of the second irrigation (Fig. 4b). It is of note that the sandy soil samples treated with BE produced by L45 and V3E1, which did not reduce IFT, retained higher water content compared to those treated with Triton X-100 or BS from isolate R43, which instead was able to reduce the IFT. These results suggest that L45 and V3E1 produce high molecular weight polymers with bioemulsification activity that can improve sandy soil compactness and/or absorb high water amounts, finally determining higher water retention and reduction of evaporation rates. Improvement of the water retention capacity was observed in induced biological soil crusts as a function of their total carbohydrate content .
The capability of BS/BE-treated sandy soil to absorb humidity from the surrounding environment was also evaluated after 36 h of incubation at 30 °C and high relative humidity. Samples treated with tap water or Triton X-100 absorbed the same amounts of humidity, which was statistically different from the quantity of water vapor absorbed by the sand samples treated with L45, R43 and V3E1. The BS/BE produced by these bacteria significantly improved the amount of water absorbed by the sandy soil. Data reported in Fig. 4c showed that L45-treated sand sample was able to absorb the highest amount of water vapor, i.e. 607.7% higher than the control treated with tap water. Similarly, V3E1 and R43 BS/BE determined an uptake of humidity 259.1 and 254.9%, respectively, higher than control (Fig. 4c). Interestingly, the strain L45, that showed the highest humidity uptake rate, exhibited also the ability to highly emulsify different solvents (Table 1).
The effect of the bacterial BS/BE on the soil water retention and humidity absorption highlights the potential of bacterial strains typical of arid environments to improve the hydrological properties of sandy soils, even though we must consider that these results were obtained with a single soil type. Different soils may present different responses to bacterial BS/BE and a further research is needed to improve the knowledges regarding the response of soils to the use of surfactants for improving its hydrological properties.
We showed that bacteria from arid environments can produce polyextremotolerant bioemulsifiers that are functional in broad ranges of pH and temperature and in the presence of 30%w/v NaCl. The emulsions were stable up to 30 months incubation under several conditions. The partially purified BS/BE produced by isolates L45, R43 and V3E1 significantly improved water retention and humidity uptake of a sandy soil compared to Triton X-100 or tap water. The data offer insights into the biotechnological properties of BS/BE from bacteria inhabiting non-conventional environments and their potential role for environmental protection and the improvement of soil hydrological properties in arid regions. Indeed, the use of BS/BE as additives in the irrigation water would be an interesting approach to promote plant stress to drought as an alternative to the conventional inoculation of living microbial cells, overcoming potential limitations related to over competition of the inoculated bacteria by the rhizosphere microbioma. However, the application of BS/BE should be carefully evaluated taking into consideration the characteristics of the soil to be irrigated since BS/BE–soil interaction can vary, resulting in a decrease or an increase of the soil hydrophobicity.
Satpute SK, Banpurkar AG, Dhakephalkar PK, Banat IM, Chopade BA. Methods for investigating biosurfactants and bioemulsifiers: a review. Crit Rev Biotechnol. 2010;30:127–44.
Lima TM, Procópio LC, Brandão FD, Carvalho AM, Tótola MR, Borges AC. Biodegradability of bacterial surfactants. Biodegradation. 2011;22:585–92.
Lima TM, Procópio LC, Brandão FD, Leão BA, Tótola MR, Borges AC. Evaluation of bacterial surfactant toxicity towards petroleum degrading microorganisms. Bioresour Technol. 2011;102:2957–64.
Monteiro AS, Bonfim MR, Domingues VS, Corrêa A Jr, Siqueira EP, Zani CL, Santos VL. Identification and characterization of bioemulsifier-producing yeasts isolated from effluents of a dairy industry. Bioresour Technol. 2010;101:5186–93.
Sachdev DP, Cameotra SS. Biosurfactants in agriculture. Appl Microbiol Biotechnol. 2013;97:1005–16.
Alami Y, Achouak W, Marol C, Heulin T. Rhizosphere soil aggregation and plant growth promotion of sunflowers by an exopolysaccharide-producing Rhizobium sp. strain isolated from sunflower roots. Appl Environ Microbiol. 2000;66:3393–8.
Kaci Y, Heyraud A, Barakat M, Heulin T. Isolation and identification of an EPS-producing Rhizobium strain from arid soil Algeria.: characterization of its EPS and the effect of inoculation on wheat rhizosphere soil structure. Res Microbiol. 2005;156:522–31.
Colica G, Li H, Rossi F, Li DH, Liu YD, De Philippis R. Microbial secreted exopolysaccharides affect the hydrological behavior of induced biological soil crusts in desert sandy soils. Soil Biol Biochem. 2014;68:62–70.
Mueller K, Deurer M. Review of the remediation strategies for soil water repellency. Agric Ecosyst Environ. 2011;144:208–21.
Rillig MC, Mardatin NF, Leifheit EF, Antunes PM. Mycelium of arbuscular mycorrhizal fungi increases soil water repellency and is sufficient to maintain water-stable soil aggregates. Soil Biol Biochem. 2010;42:1189–91.
Chanal A, Chapon V, Benzerara K, Barakat M, Christen R, Achouak W, Barras F, Heulin T. The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria. Environ Microbiol. 2006;8:514–25.
Stivaletta N, Barbieri R, Picard C, Bosco M. Astrobiological significance of the sabkha life and environments of southern Tunisia. Planet Space Sci. 2009;57:597–605.
Burch AY, Zeisler V, Yokota K, Schreiber L, Lindow SE. The hygroscopic biosurfactant syringafactin produced by Pseudomonas syringae enhances fitness on leaf surfaces during fluctuating humidity. Environ Microbiol. 2014;16:2086–98.
Burch AY, Browne PJ, Dunlap CA, Price NP, Lindow SE. Comparison of biosurfactant detection methods reveals hydrophobic surfactants and contact-regulated production. Environ Microbiol. 2011;13:2681–91.
Roberts MS, Nakamura LK, Cohan FM. Bacillus mojavensis sp. nov., distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence, and differences in fatty acid composition. Int J Syst Bacteriol. 1994;44:256–64.
Wang LT, Lee FL, Tai CJ, Yokota A, Kuo HP, et al. Reclassification of Bacillus axarquiensis Ruiz-Garcia et al. 2005 and Bacillus malacitensis Ruiz-Garcia et al. 2005 and Bacillus malacitensis Ruiz-Garcia. Int J Syst Evol Microbiol. 1994;2007(57):1663–7.
Reva ON, Smirnov VV, Pettersson B, Priest FG. Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.). Int J Syst Evol Microbiol. 2002;52:101–7.
Earl AM, Eppinger M, Fricke WF, Rosovitz MJ, Rasko DA, Daugherty S, Losick R, Kolter R, Ravel J. Whole-genome sequences of Bacillus subtilis and close relatives. J Bacteriol. 2012;194:2378–9.
Raddadi N, Cherif A, Daffonchio D, Fava F. Halo-alkalitolerant and thermostable cellulases with improved tolerance to ionic liquids and organic solvents from Paenibacillus tarimensis isolated from the Chott El Fejej, Sahara desert, Tunisia. Bioresour Technol. 2013;150:121–8.
Raddadi N, Cherif A, Daffonchio D, Neifar M, Fava F. Biotechnological applications of extremophiles, extremozymes and extremolytes. Appl Microbiol Biotechnol. 2015;99:7907–13.
Wang M, Yang M, Zhou G, Luo X, Zhang L, Tang Y, Fang C. Paenibacillus tarimensis sp. nov., isolated from sand in Xinjiang, China. Int J Syst Evol Microbiol. 2008;58:2081–5.
Bodour AA, Miller-Maier RM. Application of a modified drop-collapse technique for surfactant quantitation and screening of biosurfactant-producing microorganisms. J Microbiol Methods. 1998;32:273–80.
Liu B, Liu J, Ju M, Li X, Yu Q. Purification and characterization of biosurfactant produced by Bacillus licheniformis Y-1 and its application in remediation of petroleum contaminated soil. Mar Pollut Bull. 2016;107:46–51.
Dastgheib SM, Amoozegar MA, Elahi E, Asad S, Banat IM. Bioemulsifier production by a halothermophilic Bacillus strain with potential applications in microbially enhanced oil recovery. Biotechnol Lett. 2008;30:263–70.
Suthar H, Hingurao K, Desai A, Nerurkar A. Evaluation of bioemulsifier mediated microbial enhanced oil recovery using sand pack column. J Microbiol Methods. 2008;75:225–30.
Chauhan AK, Maheshwari DK, Kim K, Bajpai VK. Termitarium-inhabiting Bacillus endophyticus TSH42 and Bacillus cereus TSH77 colonizing Curcuma longa L.: isolation, characterization, and evaluation of their biocontrol and plant-growth-promoting activities. Can J Microbiol. 2016;62:880–92.
Youssef NH, Duncan KE, McInerney MJ. Importance of 3-hydroxy fatty acid composition of lipopeptides for biosurfactant activity. Appl Environ Microbiol. 2005;71:7690–5.
Joshi SJ, Geetha SJ, Desai AJ. Characterization and application of biosurfactant produced by Bacillus licheniformis R2. Appl Biochem Biotechnol. 2015;177:346–61.
Bezza FA, Chirwa EM. Pyrene biodegradation enhancement potential of lipopeptide biosurfactant produced by Paenibacillus dendritiformis CN5 strain. J Hazard Mater. 2017;321:218–27.
Gudiña EJ, Pereira JF, Costa R, Evtuguin DV, Coutinho JA, Teixeira JA, Rodrigues LR. Novel bioemulsifier produced by a Paenibacillus strain isolated from crude oil. Microb Cell Fact. 2015;31:14.
Liang TW, Wu CC, Cheng WT, Chen YC, Wang CL, Wang IL, Wang SL. Exopolysaccharides and antimicrobial biosurfactants produced by Paenibacillus macerans TKU029. Appl Biochem Biotechnol. 2014;172:933–50.
Najafi AR, Rahimpour MR, Jahanmiri AH, Roostaazad R, Arabian D, Soleimani M, Jamshidnejad Z. Interactive optimization of biosurfactant production by Paenibacillus alvei ARN63 isolated from an Iranian oil well. Colloids Surf B Biointerfaces. 2011;82:33–9.
Gutiérrez T, Mulloy B, Black K, Green DH. Glycoprotein emulsifiers from two marine Halomonas species: chemical and physical characterization. J Appl Microbiol. 2007;103:1716–27.
Raddadi N, Giacomucci L, Totaro G, Fava F. Marinobacter sp. from marine sediments produce highly stable surface-active agents for combatting marine oil spills. Microb Cell Fact. 2017;16:186–98.
Dubey KV, Charde PN, Meshram SU, Shendre LP, Dubey VS, Juwarkar AA. Surface-active potential of biosurfactants produced in curd whey by Pseudomonas aeruginosa strain-PP2 and Kocuria turfanesis strain-J at extreme environmental conditions. Bioresour Technol. 2012;126:368–74.
White DA, Hird LC, Ali ST. Production and characterization of a trehalolipid biosurfactant produced by the novel marine bacterium Rhodococcus sp., strain PML026. J Appl Microbiol. 2013;115:744–55.
Beltrani T, Chiavarini S, Cicero DO, Grimaldi M, Ruggeri C, Tamburini E, Cremisini C. Chemical characterization and surface properties of a new bioemulsifier produced by Pedobacter sp. strain MCC-Z. Int J Biol Macromol. 2015;72:1090–6.
NR isolated the bioemulsifier-producing strains, designed the study and wrote the manuscript. LG performed the studies related to bioemulsifiers production, functional characterization and participated in the water retention/uptake assays. RM isolated the strain V3E1 and participated in the manuscript preparation. DD, AC and FF participated in the design of the study and the analyses of data. All authors read and approved the final manuscript.
The authors declare that they have no competing interests.
Availability of data and materials
Partial 16S rDNA sequences obtained within this work are available at GenBank under the accession numbers listed in the text. All data generated or analyzed during this study are included in this published article (and its Additional files 1 and 2).
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This work was financially supported by the EU in the frame of the FP-7 Project No. 312139 “Integrated Biotechnological Solutions for Combating Marine Oil Spills”–KILL·SPILL.
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Raddadi, N., Giacomucci, L., Marasco, R. et al. Bacterial polyextremotolerant bioemulsifiers from arid soils improve water retention capacity and humidity uptake in sandy soil. Microb Cell Fact 17, 83 (2018). https://doi.org/10.1186/s12934-018-0934-7
- Polyextremotolerant bioemulsifiers
- Desert sandy soil
- Water retention
- Humidity uptake
- Water stress