| Gene, protein or function | No. of genes | Chemicalsa | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
But | Byr | Diol | Furf | Ace | Ita | Lev | Suc | Deca | Ger | Ser | Thre | |||
Anaerobic respiration | Hydrogenase 1 | 6 | x | x | Â | x | x | x | x | x | Â | Â | Â | Â |
Hydrogenase 3 | 9 | x | x | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | |
Hydrogenase 4 | 11 | x | x | Â | x | x | x | Â | x | Â | Â | Â | Â | |
Nitric oxide reductase | 3 | x | x | Â | x | Â | x | x | x | Â | Â | Â | Â | |
Nitrate reductase 2 | 5 | x | x | x | x | x | Â | x | x | Â | Â | Â | x | |
Glycerol dehydrogenase | 3 | x | x | Â | x | x | Â | x | x | Â | Â | Â | x | |
Lactate dehydrogenase | 2 | x | x | x | x | x | Â | x | Â | x | Â | Â | Â | |
Fumarate dehydrogenase | 4 | x | x | x | x | x | x | x | x | Â | Â | Â | x | |
Fermentation | Pyruvate formate lyase | 3 | x | x | x | x | Â | Â | Â | Â | Â | Â | Â | Â |
Acetate (pta, ackA) | 2 | x | Â | x | Â | x | x | Â | x | Â | Â | x | x | |
Alcohol dehydrogenase | 2 | x | x | x | x | x | x | x | x | Â | Â | Â | x | |
Lactate dehydrogenase | 1 | x | x | x | x | x | Â | Â | Â | Â | Â | Â | x | |
Electron transport chain | NADH dehydrogenase I | 13 | x | x | Â | x | Â | Â | Â | Â | Â | Â | Â | Â |
NADH dehydrogenase II | 1 | x | x | Â | x | Â | Â | Â | Â | Â | Â | Â | x | |
Cytochrome d | 2 | x | x | x | x | x | Â | Â | Â | Â | Â | x | x | |
Menaquinol biosynthesis | 6 | x | x | Â | Â | x | x | x | x | Â | Â | Â | Â | |
Ubiquinol biosynthesis | 8 | x | x | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | |
Acid resistance | Acid fitness island | 12 | Â | x | Â | Â | x | Â | x | Â | x | Â | Â | x |
Glutamate decarb. (gadAB) | 2 | Â | x | x | Â | x | x | x | Â | x | x | Â | x | |
Antiporters (gadC, adiC, cadA) | 3 | x | x | x | x | x | x | x | Â | Â | Â | Â | Â | |
Cyclopropane fatty acid (cfa) | 1 | x | x | x | x | x | x | x | x | x | x | Â | x | |
Oxidative stress | sodC, katE | 2 | x | x | x | x | x | x | x | x | Â | Â | Â | Â |
Carbon metabolism | Pentose phosphate pathway | 8 | x | x | x | x | x | Â | Â | x | Â | Â | Â | Â |
Glycolysis | 11 | x | x | x | x | x | Â | Â | Â | Â | Â | Â | Â | |
Ethanolamine | Metabolism (eut) | 12 | x | x | x | x | Â | Â | Â | Â | Â | Â | Â | Â |
Thiamine | Biosynthesis | 6 | x | x | x | x | Â | x | x | x | Â | Â | Â | x |
Membrane | Colanic acid synthesis | 20 | x | xb | Â | xb | x | x | Â | x | Â | Â | Â | Â |
Iron sulphur cluster | Isc | 4 | x | x | x | x | x | Â | x | Â | Â | x | x | x |
Suf | 6 | Â | x | x | Â | x | x | x | x | x | Â | Â | Â | |
Potassium | Transporter (kdp) | 5 | x | x | Â | x | x | x | Â | x | x | x | Â | Â |
Quorum sensing autoinducer | Synthesis | 2 | x | x | x | x | x | x | x | x | Â | x | Â | x |
Transport | 4 | x | x | x | x | x | Â | x | Â | Â | Â | Â | Â | |
Sigma factors | rpoS | 1 | x | x | x | x | x | x | x | x | x | x | Â | x |
rpoE | 1 | x | x | x | x | x | x | Â | x | Â | Â | Â | x | |
rpoH | 1 | x | x | x | x | Â | Â | Â | x | x | x | Â | x | |
rpoD | 1 | x | x | x | x | x | Â | Â | Â | Â | Â | Â | x | |
rpoN | 1 | x | x | x | x | Â | Â | Â | Â | Â | Â | Â | Â |