plasmid, strain or primer | Description or primer sequence | Source or added sitea |
---|---|---|
Plasmid | ||
pRK2013 | KmR, mob+, tra+, helper plasmid | Laboratory stored |
pBBR1MCS5 | Broad-host-range cloning vector; mod, rep, Gm R , lacZ | [21] |
pBBR1MCS5-P tufB -ga2dh | pBBRMCS5 derivative expressing gox1230-gox1232 containing a tufB promoter, Gm R | This study |
pBBR1MCS5-P ga2dh -ga2dh | pBBRMCS5 derivative expressing gox1230-gox1232 containing a ga2dh promoter, Gm R | This study |
pBBR1MCS5-P gHp0169 -ga2dh | pBBRMCS5 derivative expressing gox1230-gox1232 containing a gHp0169 promoter, Gm R | This study |
Strain | ||
E. coli DH5α | F-, ϕ80, lacZ∆M15, ∆(lacZYA-argF), U169, endA1, recA1, hsdR17(rk-mK+), supE44, λ−, thi-1, gyrA96, relA1, phoA | Tiangen, Beijing, China |
G. oxydans | Wild type, cefR | DSM2003 |
G. oxydans_pBBR1MCS5 | G. oxydans contain plasmid pBBR1MCS5 | This study |
G. oxydans_tufB_ga2dh | G. oxydans contain plasmid pBBR1MCS5-P tufB -ga2dh, CefR, GmR | This study |
G. oxydans_g2adh_ga2dh | G. oxydans contain plasmid pBBR1MCS5-P ga2dh -ga2dh, CefR, GmR | This study |
G. oxydans_gHp0169_ga2dh | G. oxydans contain plasmid pBBR1MCS5-P gHp0169 -ga2dh, CefR, GmR | This study |
Primer | ||
ga2dhf | CTATCTAGAGGAGAAACCTGTGCCCCCCATG | XbaI |
ga2dhr | GAGGGATCCTTCAGTTCAGTGAGACCGCATCATC | BamHI |
P tufB _f | ACTGAGCTCCGATGGTAAGAAATCCACTGC | SacI |
P tufB _r | ATATCTAGACCAAAACCCCGCTCCACC | XbaI |
P-ga2dh_f | CACTCTAGACAGAACCAGTGGCCGCCCCGACAAC | XbaI |
P-ga2dh_r | GAGCTGCAGTTCAGTTCAGTGAGACCGCATCATC | PstI |
P-gHp0169_f | ATAGAGCTCTGAAAGCGGCTGGCGCGT | SacI |
P-gHp0169_r | GCATCTAGAGCGGAAGGCGTTATACCCTGA | XbaI |
rtPCR primers | ||
16s-RNA_f | GCGGTTGTTACAGTCAGATG | |
16s-RNA_r | GCCTCAGCGTCAGTATCG | |
gox1230_f | GCTGGAGCGAGGAAGACATC | |
gox1230_r | CGGGTGGCAGACTTTTGAG | |
gox1231_f | CCAGAACCTGTCCCAGTCCAC | |
gox1231_r | CGACAACATTACGGCAAAGG | |
gox1232_f | CGACAACATTACGGCAAAGG | |
gox1232_r | GCCAGGGAAACCCAGCAT | |
gox0265_f | AATGTTCGAGTGGGGTGGTC | |
gox0265_r | CCCTTGGCGTCCTTTTCAG |