Novel polyoxins generated by heterologously expressing polyoxin biosynthetic gene cluster in the sanN inactivated mutant of Streptomyces ansochromogenes
© Li et al.; licensee BioMed Central Ltd. 2012
Received: 15 June 2012
Accepted: 29 September 2012
Published: 8 October 2012
Polyoxins are potent inhibitors of chitin synthetases in fungi and insects. The gene cluster responsible for biosynthesis of polyoxins has been cloned and sequenced from Streptomyces cacaoi and tens of polyoxin analogs have been identified already.
The polyoxin biosynthetic gene cluster from Streptomyces cacaoi was heterologously expressed in the sanN inactivated mutant of Streptomyces ansochromogenes as a nikkomycin producer. Besides hybrid antibiotics (polynik A and polyoxin N) and some known polyoxins, two novel polyoxin analogs were accumulated. One of them is polyoxin P that has 5-aminohexuronic acid with N-glycosidically bound thymine as the nucleoside moiety and dehydroxyl-carbamoylpolyoxic acid as the peptidyl moiety. The other analog is polyoxin O that contains 5-aminohexuronic acid bound thymine as the nucleoside moiety, but recruits polyoximic acid as the sole peptidyl moiety. Bioassay against phytopathogenic fungi showed that polyoxin P displayed comparatively strong inhibitory activity, whereas the inhibitory activity of polyoxin O was weak under the same testing conditions.
Two novel polyoxin analogs (polyoxin P and O) were generated by the heterologous expression of polyoxin biosynthetic gene cluster in the sanN inactivated mutant of Streptomyces ansochromogenes. Polyoxin P showed potent antifungal activity,while the activity of polyoxin O was weak. The strategy presented here may be available for other antibiotics producers.
The genes responsible for the biosynthesis of polyoxins have been cloned from S. cacaoi. It was suggested that seven genes polA, B, D, H, I, J and K were involved in polyoxin nucleoside moiety biosynthesis (Figure 1). Among them, polB, a proposed thymidylate synthase coding gene, likely governs the methylation of C-5′ position of uracil to afford thymine base. Genes encoding enzymes for subsequent oxidation at C-7′ are out of the cloned polyoxin biosynthetic cluster and may locate at other positions of chromosome. Previous efforts of heterologously expressing the polyoxin biosynthetic gene cluster in S. lividans TK24 obtained only polyoxin H .
To expand the diversity of polyoxins by combinatorial biosynthetic strategy, the nikkomycin producer was considered as a host for heterologous expression of polyoxin. Nikkomycins (Figure 1) are peptidyl nucleoside antibiotics produced by S. ansochromogenes or S. tendae[10, 11]. The peptidyl moiety of nikkomycin is hydroxypyridylhomothreonine; while its nucleoside moiety is 5-aminohexuronic acid N-glycosidically bounded uracil in nikkomycin Z (the same as polyoxin K, L and M) or 5-aminohexuronic acid N-glycosidically bounded imidazolone in nikkomycin X. The gene cluster responsible for biosynthesis of nikkomycins has already been cloned and sequenced from S. ansochromogenes (Figure 1) . Previous combinatorial biosynthesis attempts resulted in polyoxin N and a novel compound polynik A by expressing the polyoxin peptidyl moiety genes in sanN inactivated mutant (ΔsanN) . SanN catalyzes the conversion from benzoate-CoA to benzaldehyde, which is a precursor of nikkomycin peptidyl moiety . The resulting ΔsanN strain lost its ability to synthesize hydroxypyridylhomothreonine, but it can accumulate 5-aminohexuronic acid bounded uracil or 5-aminohexuronic acid bounded imidazole. Considering the yield of nikkomycins produced by S. ansochromogenes is quite high , the ΔsanN strain can supply not only the 5-aminohexuronic acid bounded imidazole for hybrid polynik compounds but also 5-aminohexuronic acid bounded uracil for more polyoxin production, which may lead to the production of novel polyoxin analogs.
Therefore, we introduced the polyoxin biosynthetic gene cluster into the ΔsanN strain of S. ansochromogenes in this study. Here, we report that two new polyoxins (polyoxin O and P) were isolated from this constructed recombinant strain and the production of hybrid compounds, polynik A and polyoxin N, were also observed. Bioactive investigations revealed that polyoxin P displayed strong antifungal activity, whereas polyoxin O displayed weak antifungal activity. The strategy we have taken in this study is significant to obtain novel antibiotics or their derivatives with potential value in application.
Construction of S. ansochromogenes ΔsanN/pPOL
Cosmid 9A, containing the clustered polyoxin biosynthetic genes, was screened by PCR from the genomic cosmid library preserved in our lab. To construct a recombinant plasmid for heterologous expression of genes, the clustered polyoxin genes in cosmid 9A were transferred to pSET152 via Red/ET recombination technology to result in pPOL, which could be integrated into the chromosome in Streptomyces.
Plasmid pPOL was introduced into the ΔsanN strain of S. ansochromogenes by E. coli-Streptomyces intergenic conjugation, the resulting conjugates were verified by PCR (Additional file 1: Figure S1). The exconjugate ΔsanN/pPOL was then incubated in SP liquid medium. After 5 days, the fermentation broth was used to detect bioactivity against phytopathogenic fungus. Growth inhibition of A. kikuchiana was clearly observed (Additional file 1: Figure S2).
Isolation and characterization of polyoxin P
1 H and 13 C NMR data of polyoxin P
1H (δ, mult.,J)
5.734(1H, d, 4.8)
4.467 (1H, m)
4.780(1H, d, 4.2)
1.828 (3H, s)
4.194(1H, t, 7.2)
1.919- 2.107(2H, m)
Isolation and characterization of polyoxin O
The fermentation broth of ΔsanN/pPOL strain was processed and subjected to HPLC analysis. Two compounds with retention time at about 19.4 and 22 min were distinguished in comparison with the host strain as a control (Figure 2). The compounds were collected and subjected to LC-MS and MS/MS analysis (Figure 3). Results showed that the compound has [M+H]+ ion at m/z 411.1, and contains aminohexuronic acid with N-glycosidically bound thymine as the nucleoside moiety, polyoximic acid as the peptidyl moiety (Figure 3). So far as we know, this compound has not been reported, and was named as polyoxin O. In contrast to the standard compound, the peak at 22 min was identified as polyoxin H.
Bioassay of polyoxin P and polyoxin O
Given more and more biosynthetic machineries of natural products are elucidated, combinatorial biosynthesis has been developed as an optional way to generate novel antibiotics. A large number of successful examples demonstrated that the method was available [15–17]. In this study, we constructed a ΔsanN/pPOL strain that provides a 5-aminohexuronic uracil and 5-aminohexuronic imidazolone as precursors for novel polyoxins formation. Two novel polyoxins (polyoxin P and O) were obtained together with two hybrid compounds (polynik A and polyoxin N) and several known polyoxins (polyoxin H, J and thymine polyoxin C).
All the uracil derived polyoxins accumulated in the ΔsanN/pPOL were added a C-5′ methyl to form thymine base, which should be catalyzed by the thymidylate synthase PolB. Since the genes encoding enzymes to modify C-7′ methyl group into hydroxylmethyl and carboxylic acid are not in pPOL, ΔsanN/pPOL is an ideal strain to produce thymine derived polyoxins. Previous SAR (structure-activity relationships) research revealed that thymine derived polyoxins have better antifungal activity . The bioassay against phytopathogenic fungi showed that the polyoxin P possesses comparatively strong bioactivity as polyoxin H (Figure 4), while polyoxin O has very weak bioactivity, indicating that components containing different peptidyl moieties possess different biological activity (DHCPOAA is important, whereas POIA is not necessary).
Our results proved that the S. ansochromogenes has capacity to supply enough 5-aminohexuronic uracil for polyoxin biosynthesis. To generate more thymine derived polyoxins, blocking the 5-aminohexuronic imidazolone pathway and increasing the production of polyoxin peptidyl moieties are considered to optimize this heterologous expression system. The strategy in this study is efficient to obtain novel antibiotics or their derivatives and it may be available for other bacteria to result in new compounds.
Including two new members (polyoxin P and O), variety of thymine derived polyoxins and hybrid compounds were generated by hererologous expression of polyoxin biosynthetic gene cluster in the sanN disruption mutant of S. ansochromogenes. Polyoxin P showed inhibitory activity against A. kuchiana, A. fumigates, R. solani, B. cinerea and T. viride, whereas the bioactivity of polyoxin O was quite weak against above five indicator strains under the same testing conditions. The strategy presented here may be available for other antibiotics producers.
Materials and methods
Stains and culture conditions
For spores collection, S. cacaoi subsp. asoensis AS4.1602 and S. ansochromogenes sanN disruption mutant were grown on mannitol/soya medium (MS) and minimal medium (MM), respectively . For genomic DNA extraction, Streptomyces were grown in liquid YEME medium containing 20% sucrose, which was also used as seed culture for fermentation. For antibiotics production, the seed culture was inoculated into fresh SP medium at 1% ratio and further incubated for 5 days at 28°C, and then the culture broth was collected. Alternaria kikuchiana, Aspergillus fumigates, Rhizoctonia solani, Botrytis cinerea and Trichoderma viride obtained from the China General Microbiological Culture Collection Center (CGMCC) were grown at 28°C and used as indicator strains for bioassay. E. coli JM109 and DH5α were used as the hosts for propagating plasmids. Methylation-deficient E. coli ET12567 (pUZ8002) was used as a host for transferring DNA from E. coli to Streptomyces by intergeneric conjugation .
When necessary, antibiotics were used at the following final concentrations: 100 μg ml-1 ampicillin (Amp), 100 μg ml-1 kanamycin (Kan), 100 μg ml-1 apramycin (Apr), 15 μg ml-1 tetracycline and 12.5 μg ml-1 chloramphenicol in LB for E. coli; 10 μg ml-1 Apr or Kan in MM, MS and YEME for Streptomyces.
Plasmids and DNA manipulations
Isolation of plasmids and chromosomal DNA were carried out according to the standard methods [18, 19]. Conjugal transfer from E. coli to Streptomyces and Red/ET recombination were performed as described elsewhere [18, 20]. Cosmid 9A containing the polyoxin biosynthetic gene cluster was screened by PCR from the genomic cosmid library preserved in our lab. Then, cosmid cos9A was digested with Bam HI and the resulting 10.6 kb lineared vector fragment was self-ligated to create cosAfl. CosAfl was digested with Eco RI and the excised DNA fragment (about 4.1 kb) was inserted into the same site of pSET152 to generate pSET152::Afl. Plasmid pSET152::polR[21, 22] was digested with Eco RI/Xba I and the 3.4 kb DNA fragment containing polR was inserted into pIJ2925 to give pIJ2925::polR. A 3.4 kb Xba I/Bgl II DNA fragment was excised from pIJ2925::polR and then inserted into the Xba I/Bam HI site of pSET152::Afl to result in pSET152::polR::Afl. pSET152::polR::Afl was linearized with Nde I/Spe I digestion and introduced into E. coli BW25113/pIJ790 containing cosmid cos9A. Then pPOL was generated after λ-Red-mediated recombination.
Detection of polyoxins and antifungal bioassays
The fermentation broth was chromatographed on a macroporous absorption resin HP-20 column, and the flow-through was collected and concentrated in vacuum. Then, 6 volumes of cold ethanol were added and kept at 4°C overnight, the precipitate was collected by centrifugation and dried at room temperature. The crude powder was dissolved in water. Polyoxins are monitored by HPLC analysis with Agilent 1100 HPLC system. Two different HPLC conditions were used to identify different compounds. For detection of polyoxin P: ZORBAX SB-AQ was used as the column, 95% H2O (containing 0.1% trifluoroacetic acid) and 5% methanol were used as the mobile phase, the flow rate was 0.3 ml/min, and the absorption wavelength was 260nm. For detection of polyoxin O: ZORBAX SB-C18 column was used for analysis, and mobile phase conditions were the same as those for detecting nikkomycins described elsewhere . The detection wavelength was 260 nm. Bioassay against A. kikuchiana, A. fumigates, R. solani, B. cinerea and T. viride was carried out according to the method used in previous study , and 100μl polyoxins solution (about 100 μg ml-1) was added.
Isolation of polyoxins
The method for isolating polyoxin P was similar to that for polynik A . The fermentation broth was harvested by centrifugation and the pH was adjusted to 4.5 with acetic acid. Then, it was chromatographed on a macroporous absorption resin HP-20 (Mitsubishi) column, and the flow-through was collected and subjected to a Dowex 50WX2 (Sigma) column. The column was eluted with 0.4 N ammonia solution and the samples with antifungal activity was collected and concentrated to a small volume (less than 10 ml). About 6 volumes of cold ethanol were added and the precipitated sample was dried and dissolved in water, subsequently it was further purified by HPLC and identified as a pure polyoxin P. Polyoxin O was first purified by the ion pair HPLC program , lyophilized and dissolved in water. The sample was subsequently subjected to HPLC to remove salts with following conditions: ZORBAX SB-C18 was used as the column with 1 ml min-1 flow rate at 40°C, a liner gradient of 10%-50% solution B (solution A = 0.1% trifluoroacetic acid; solution B = methanol) over 30 min was used as the elution profile.
MS and Tandem Mass Spectrometry analyses were carried out on LCQ Deca XP Plus (Thermo-Finnigan) with the electrospray ionization source in positive mode. For high resolution mass spectrometry analysis, an Aligent 1200 HPLC system and 6520 QTF-MS system were used in positive mode. NMR analyses were subjected with a Bruker spectrometer (AV600 MHz).
This work was supported by grants from the National Natural Science Foundation of China (Grant numbers 31030003 and 31270110) and the Ministry of Science and Technology of China (2009CB118905 and 2012CB721103).
- Isono K, Asahi K, Suzuki S: Studies on polyoxins, antifungal antibiotics. 13. The structure of polyoxins. J Am Chem Soc. 1969, 91 (26): 7490-7505.View ArticleGoogle Scholar
- Hori M, Eguchi J, Kakiki K, Misato T: Studies on the mode of action of polyoxins. VI. Effect of polyoxin B on chitin synthesis in polyoxin-sensitive and resistant strains of Alternaria kikuchiana. J Antibiot. 1974, 27 (4): 260-266.View ArticleGoogle Scholar
- Hori M, Kakiki K, Suzuki S, Misato T: Studies on the mode of action of polyoxins. Part III. Relation of polyoxin structure to chitin synthetase inhibition. Agr Biol Chem. 1971, 35 (8): 1280-1291.View ArticleGoogle Scholar
- Endo A, Misato T: Polyoxin D, a competitive inhibitor of UDP-N-acetylglucosamine: chitin N-acetylglucosaminyltransferase in Neurospora crassa. Biochem Biophys Res Commun. 1969, 37 (4): 718-722.View ArticleGoogle Scholar
- Isono K, Suzuki S: The structures of polyoxins A and B. Tetrahedron Lett. 1968, 9: 1133-1137.View ArticleGoogle Scholar
- Suzuki S, Isono K, Nagatsu J, Mizutani T, Kawashima Y, Mizuno T: Isolation and characterizaion of polyoxin J, K and L, new components of polyoxin complex. Agr Biol Chem. 1968, 32 (6): 792-793.View ArticleGoogle Scholar
- Isono K, Nagatsu J, Kobinata K, Sasaki K, Suzuki S: Studies on polyoxins, antifungal antibiotics. Part V. Isolation and characterization of polyoxins C, D, E, F, G, H and I. Agr Biol Chem. 1967, 31 (2): 190-199.View ArticleGoogle Scholar
- Suzuki S, Isono K, Nagatsu J, Mizutani T, Kawashima Y, Mizuno T: A new antibiotic, polyoxin A. J Antibiot. 1965, 18: 131Google Scholar
- Chen W, Huang T, He X, Meng Q, You D, Bai L, Li J, Wu M, Li R, Xie Z, Zhou H, Zhou X, Tan H, Deng Z: Characterization of the polyoxin biosynthetic gene cluster from Streptomyces cacaoi and engineered production of polyoxin H. J Biol Chem. 2009, 284 (16): 10627-10638.View ArticleGoogle Scholar
- Chen W, Zeng H, Tan H: Cloning, sequencing, and function of sanF: a gene involved in nikkomycin biosynthesis of Streptomyces ansochromogenes. Curr Microbiol. 2000, 41 (5): 312-316.View ArticleGoogle Scholar
- Delzer J, Fiedler HP, Muller H, Zahner H, Rathmann R, Ernst K, Konig WA: New nikkomycins by mutasynthesis and directed fermentation. J Antibiot. 1984, 37 (1): 80-82.View ArticleGoogle Scholar
- Liao G, Li J, Li L, Yang H, Tian Y, Tan H: Cloning, reassembling and integration of the entire nikkomycin biosynthetic gene cluster into Streptomyces ansochromogenes lead to an improved nikkomycin production. Microb Cell Fact. 2010, 9: 6View ArticleGoogle Scholar
- Li J, Li L, Tian Y, Niu G, Tan H: Hybrid antibiotics with the nikkomycin nucleoside and polyoxin peptidyl moieties. Metab Eng. 2011, 13 (3): 336-344.View ArticleGoogle Scholar
- Ling H, Wang G, Li J, Tan H: sanN encoding a dehydrogenase is essential for nikkomycin biosynthesis in Streptomyces ansochromogenes. J Microbiol Biotechnol. 2008, 18 (3): 397-403.Google Scholar
- Ding W, Lei C, He Q, Zhang Q, Bi Y, Liu W: Insights into bacterial 6-methylsalicylic acid synthase and its engineering to orsellinic acid synthase for spirotetronate generation. Chem Biol. 2010, 17 (5): 495-503.View ArticleGoogle Scholar
- Salas JA, Mendez C: Indolocarbazole antitumour compounds by combinatorial biosynthesis. Curr Opin Chem Biol. 2009, 13 (2): 152-160.View ArticleGoogle Scholar
- Winter JM, Tang Y: Synthetic biological approaches to natural product biosynthesis. Curr Opin Biotechnol. 2011, 23: 1-8.View ArticleGoogle Scholar
- Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA: Practical Streptomyces Genetics. 2000, Norwich: John Innes Foundation,Google Scholar
- Sambrook J, Fritsch T, Maniatis EF: Molecular cloning: A laboratory Manual. 2001, Cold Spring Harbor NY: Cold Spring Harbor Laboratory Press,Google Scholar
- Gust B, Challis GL, Fowler K, Kieser T, Chater KF: PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proc Natl Acad Sci USA. 2000, 100 (4): 1541-1546.View ArticleGoogle Scholar
- Li R, Xie Z, Tian Y, Yang H, Chen W, You D, Liu G, Deng Z, Tan H: polR, a pathway-specific transcriptional regulatory gene, positively controls polyoxin biosynthesis in Streptomyces cacaoi subsp. asoensis. Microbiology. 2009, 155 (6): 1819-1831.View ArticleGoogle Scholar
- Li R, Liu G, Xie Z, He X, Chen W, Deng Z, Tan H: PolY, a transcriptional regulator with ATPase activity, directly activates transcription of polR in polyoxin biosynthesis in Streptomyces cacaoi. Mol Microbiol. 2010, 75 (2): 349-364.View ArticleGoogle Scholar
- Schuz TC, Fiedler HP, Zahner H: Metabolic products of microorganisms. 263 Nikkomycin Sz, Sx, Soz and Sox, new intermediates associated to the nikkomycin biosynthesis of Streptomyces tendae. J Antibiot. 1992, 45 (2): 199-206.View ArticleGoogle Scholar
- Liu G, Tian Y, Yang H, Tan H: A pathway-specific transcriptional regulatory gene for nikkomycin biosynthesis in Streptomyces ansochromogenes that also influences colony development. Mol Microbiol. 2005, 55 (6): 1855-1866.View ArticleGoogle Scholar
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