Table 1 Statistics of K. humilis MAW1 genome assembly strategies used in the study (Canu, only Nanopore reads; Canu/Pilon, assembly of Nanopore reads polished with short reads; SPAdes-hybrid, both long and short reads; SPAdes-PE, only Illumina reads)
Parameter | Canu | Canu + Pilon | SPAdes-hybrid | SPAdes-PE |
|---|---|---|---|---|
# contigs | 57 | 57 | 3416 | 9297 |
Largest contig | 2,297,614 | 2,307,406 | 565,621 | 216,146 |
Total length | 15,353,986 | 15,422,215 | 23,043,389 | 21,499,633 |
GC (%) | 48.87 | 48.94 | 48.98 | 49.04 |
N50 | 1,113,526 | 1,118,589 | 28,419 | 3765 |
N75 | 487,588 | 489,712 | 9119 | 1769 |
L50 | 5 | 5 | 188 | 1349 |
L75 | 9 | 9 | 567 | 3448 |
Complete BUSCO (%) | 73.79 | 94.83 | 97.24 | 83.79 |
Partial BUSCO (%) | 16.9 | 3.1 | 1.38 | 13.79 |