Table 1 Eubacterium strains used in this study
Current strain designation of strains according to DSMZ | Strain designation | Collection numbers | Accession number | Genome size [bp] | G + C content [mol%] | CDS | Genes | rRNAs; tRNAs | Illumina coverage | Illumina mapping rate | Nanopore coverage | Nanopore mapping rate | References |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Eubacterium limosum | Type strain | DSM 20543; ATCC 8486; NCIB 9763 | CP019962.1 | 4,422,837 | 47.2 | 4,090 | 4,209 | 16; 61 | – | – | – | – | [12] |
Eubacterium limosum | B2 | not publicly available | CP097376.1 | 4,421,327 | 47.2 | 4,085 | 4,205 | 16; 51 | – | – | – | – | [20] |
Eubacterium callanderi | FD, type strain | DSM 3662; ATCC 49165; JCM 10284 | JAVVAB000000000.1 | 4,369,831 | 47.3 | 4,033 | 4,109 | 16; 59 | 189x | 96.66% | 259x | 97.59% | This study |
“Butyribacterium methylotrophicum” | Marburg | DSM 3468; ATCC 33266 | CP132155.1 CP132156.1 | 4,278,751 | 47.5 | 3,979 | 4,075 | 16; 61 | 93x | 99.75% | 331x | 99.53% | This study |
Eubacterium callanderi | KIST612 | not publicly available | CP002273.2 | 4,316,707 | 47.5 | 4,052 | 4,158 | 16; 58 | – | – | – | – | [23] |
“Eubacterium limosum” | 2A | DSM 2593; JCM 10283 | CP132135.1 | 4,612,903 | 46.9 | 4,269 | 4,385 | 16; 60 | 214x | 99.83% | 232x | 99.85% | This study |
“Eubacterium limosum” | 11A | DSM 2594 | CP132136.1 | 4,612,907 | 46.9 | 4,291 | 4,406 | 16; 60 | 152x | 99.9% | 206x | 98.92% | this study |
“Eubacterium limosum” | G14 | DSM 107592 | CP132137.1 | 4,409,437 | 47.5 | 4,051 | 4,181 | 16; 61 | 163x | 98.09% | 174x | 97.7% | this study |
Eubacterium maltosivorans | YI, type strain | DSM 105863; JCM 32297 | CP029487.1 | 4,337,501 | 47.8 | 4,005 | 4,118 | 16; 65 | – | – | – | – | [71] |
“Eubacterium sp.” | 32 | DSM 20517; ATCC 10825; NCIB 9554; NCTC 10469 | CP132138.1 | 4,152,794 | 47.6 | 3,861 | 3,958 | 16; 60 | 178x | 99.83% | 337x | 99.76% | this study |
“Eubacterium limosum” | SA11 | not publicly available | CP011914.1 | 4,150,332 | 47.4 | 3,805 | 3,922 | 16; 60 | – | – | – | – | [81] |