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Table 1 Gibbs free energies (ΔG) of the sRNA-mRNA complex and secondary structures of the unbound sRNA

From: Dynamic feedback regulation for efficient membrane protein production using a small RNA-based genetic circuit in Escherichia coli

 

ΔG1 (kcal/mol) sRNA-mRNA

ΔG2 (kcal/mol) Secondary structure

Native cpxQ

− 4.29

− 17.40

cpxQmut1

− 11.36

− 17.50

cpxQmut2

− 12.04

− 16.50

cpxQmut3

− 12.12

− 18.50

cpxQmut4

− 23.46

− 14.40

cpxQmut5

− 26.94

− 14.40

cpxQmut6

− 30.20

− 14.80

cpxQmut7

− 39.52

− 6.40

cpxQmut8

− 40.07

− 6.20

cpxQmut9

− 33.90

− 14.40

  1. ΔG1 (kcal/mol) gives the stability of the sRNA-mRNA complex. ΔG2 (kcal/mol) gives the ΔG of the secondary structure of the free cpxQ sRNA
  2. mRNA messenger RNA, sRNA small RNA