Skip to main content

Table 1 Bacterial strains, plasmids and primers used in this study

From: GREACE-assisted adaptive laboratory evolution in endpoint fermentation broth enhances lysine production by Escherichia coli

Strain/plasmid/primer

Description

Source

Strain

 LYS1

Derivative of E. coli MG1655, capable of producing lysine [17]

Lab stock

 MU-1

Lysine hyperproducer obtained by high-throughput screening [17]

Lab stock

 MU-11

Derivative of MU-1 by elimination of its plasmid pAG that is non-relevant with lysine production [17]

This study

Plasmid

 pKAR

Kanamycin resistance, substitution of the exo, bet and gam genes on plasmid pKD46 (GenBank accession no.: MF287367) with a dnaQ mutant KR5-2 [42]

This study

 pSB4K5-I52002

Kanamycin resistance, GenBank accession no.: EU496099

[45]

 pSB

Kanamycin resistance, backbone pSB4K5, used as a control plasmid without expressing any additional gene

This study

 pSB-speB

Derivative of pSB, expressing SpeB with native promoter

This study

 pSB-speBC905T

Derivative of pSB, expressing SpeBA302V with native promoter

This study

 pSB-atpB

Derivative of pSB, expressing AtpB with native promoter

This study

 pSB-atpBG494A

Derivative of pSB, expressing AtpBS165N with native promoter

This study

 pSB-sRNAsecY-MicC

Derivative of pSB, expressing a small regulatory RNA to inhibit SecY synthesis

This study

Primer

 KR-F

cctgaattcgagctctaaggaggttataaaaaatgagcactgcaattacacgccag

 

 KR-R

tatcccgggttattatgctcgccagaggcaacttccgcctttc

 

 B4K5-F

tcaactagtagcggccgctgcaggag

 

 B4K5-R

cgacggatcctagggaattcgagtcac

 

 speB-F

gaattccctaggatccgtcgcgctgttaacccagttccgcgat

 

 speB-R

cagcggccgctactagttgacaatgtttgacgaccatcctgcatc

 

 atpB-F

gaattccctaggatccgtcgtgatagcaagtggattgctgttc

 

 atpB-R

cagcggccgctactagttgaatcatcgggatagcatccaccag

 

 secY-F

gaattccctaggatccgtctttacagctagctcagtcctagggactgtgctagcatctaatcccggttgtttagccattttctgttgggccattgcattg

 

 secY-R

cagcggccgctactagttgtataaacgcagaaaggcccaccc

Â