Insights into metabolic osmoadaptation of the ectoines-producer bacterium Chromohalobacter salexigens through a high-quality genome scale metabolic model

Piubeli, Francine; Salvador, Manuel; Argandoña, Montserrat; Nieto, Joaquín J.; Bernal, Vicente; Pastor, Jose M.; Cánovas, Manuel; Vargas, Carmen

doi:10.1186/s12934-017-0852-0

Table 3 In silico prediction of utilization of various metabolites as carbon sources and comparison with experimental data

From: Insights into metabolic osmoadaptation of the ectoines-producer bacterium Chromohalobacter salexigens through a high-quality genome scale metabolic model

Metabolite name	Compound	Metabolite formula	In silico simulation	Experimental data	References
2-ketogluconate	2ddglcn[e]	C₆H₉O₆	+	+	Arahal et al. [1]
Acetate	ac[e]	C₆H₉O₇	+	+	Arahal et al. [1]
d-Alanine	ala-d[e]	C₃H₇NO₂	+	+	Arahal et al. [1]
l-Arginine	arg-l[e]	C₆H₁₅N₄O₂	+	+	Arahal et al. [1]
l-Asparagine	asn-l[e]	C₄H₈N₂O₃	+	+	Arahal et al. [1]
Choline	chol[e]	C₅H₁₄NO	−	+	Arahal et al. [1]
Citrate	cit[e]	C₆H₅O₇	+	+	Arahal et al. [1]
Ectoine	ect-l[e]	C₆H₁₀N₂O₂	+	+	Vargas et al. [24]
Ethanol	etoh[e]	C₂H₆O	+	+	Arahal et al. [1]
Fructose 6-phosphate	f6p[e]	C₆H₁₁O₉P	+	+	Data not shown
d-Fructose	fru[e]	C₆H₁₂O₆	+	+	Arahal et al. [1]
Fumarate	fum[e]	C₄H₂O₄	+	+	Arahal et al. [1]
d-Glucose	glc-d[e]	C₆H₁₂O₆	+	+	Arahal et al. [1]
d-Gluconate	glcn[e]	C₆H₁₁O₇	+	+	Pastor et al. [7]
l-Glutamine	gln-l[e]	C₅H₁₀N₂O₃	+	+	Arahal et al. [1]
l-Glutamate	glu-l[e]	C₅H₈NO₄	+	+	Arahal et al. [1]
Glycine	gly[e]	C₂H₅NO₂	+	+	Arahal et al. [1]
Glycine betaine	glyb[e]	C₅H₁₁NO₂	−	+	Arahal et al. [1]
Glycerol	glyc[e]	C₃H₈O₃	+	+	Arahal et al. [1]
5-hydroxyectoine	hdect[e]	C₆H₁₀N₂O₃	+	+	Vargas et al. [24]
d-Lactate	lac-d[e]	C3H5O3	+	−	Arahal et al. [1]
l-Lactate	lac-l[e]	C₃H₅O₃	+	−	Arahal et al. [1]
Lysine	lys-l[e]	C₆H₁₅N₂O₂	−	+	Arahal et al. [1]
d-Malate	mal-d[e]	C₄H₄O₅	+	+	Arahal et al. [1]
l-Malate	mal-l[e]	C₄H₄O₅	+	+	Arahal et al. [1]
Maltose	malt[e]	C₁₂H₂₂O₁₁	+	+	Arahal et al. [1]
d-Mannose	man[e]	C₆H₁₂O₆	+	+	Arahal et al. [1]
l-Methionine	met-l[e]	C₅H₁₁NO₂S	−	−	Arahal et al. [1]
Proprionate	ppa[e]	C₃H₅O₂	+	+	Arahal et al. [1]
l-Proline	pro-l[e]	C₅H₉NO₂	+	+	Arahal et al. [1]
d-Ribose	rib-d[e]	C₅H₁₀O₅	+	+	Arahal et al. [1]
l-Serine	ser-l[e]	C₃H₇NO₃	+	+	Arahal et al. [1]
Succinate	succ[e]	C₄H₄O₄	+	+	Arahal et al. [1]
Trehalose	tre[e]	C₁₂H₂₂O₁₁	+	+	Arahal et al. [1]
l-Valine	val-l[e]	C₅H₁₁NO₂	−	−	Arahal et al. [1]

(+) Metabolized (−) not metabolized

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