Table 2 Properties of metabolic reconstructions of C. salexigens
Features | ||
|---|---|---|
In silico metabolic model | iFP764 | iOA584 [42] |
No. of total reactions | 1530 | 1387 |
No. of total ORFs associated | 1190 | 874 |
No. ORFs no associated | 340 | 513 |
No. of total metabolic reactions | 1023 | 880 |
Multiple compartments* | 33 | 0 |
Cytoplasmatic | 943 | 880 |
Periplasmic | 42 | 0 |
Extracellular | 5 | 0 |
No. of total transport reactions | 507 | 507 |
Exchange | 178 | 507 |
Extracellular to periplasmic | 149 | 0 |
Periplasmic to cytoplasmic | 137 | 0 |
Periplasmic to extracellular | 6 | 0 |
Cytoplasmic to periplasmic | 34 | 0 |
Extracellular to cytoplasmic | 3 | 0 |
No. of total metabolites | 1123 | 1411 |
Cytoplasmatic | 790 | 920 |
Periplasmic | 176 | 0 |
Extracellular | 157 | 491 |
Unique functional proteins | 764 | 579 |
Single gene | 458 | 579 |
Genes involved in complexes | 155 | 0 |
Instances of isozymes | 151 | 0 |