Fig. 2

Examples of relevant curated pathways in C. salexigens. a Pathways related with compatible solutes metabolism. b Entner–Doudoroff (ED) and partial glycolysis (EM) pathways of central metabolism. Names of reactions and associated genes are shown in red. A discontinuous arrow means a new reaction or a re-annotated gen-associated reaction in iFP764, with respect to iOA548. A red-truncated arrow represents a gene-associated reaction non-included in iFP764, respect to iOA548. a glc-d[c]: d-glucose; f6p[c]: beta-d-fructose-6-phosphate; tre6p[c]: alpha, alpha-trehalose 6-phosphate; tre[c]: alpha, alpha, trehalose; chol[c]: Choline; dmgly[c]: N,N-dimethylglycine; sarc[c]: Sarcosine; gly[c]: Glycine; thr-l[c]: l-Threonine; phom[c]: O-phospho-l-homoserine; hom-l[c]: l-homoserine; asp-L[c]: l-aspartate; aspsa[c]: l-aspartate-4-semialdehyde; 4pasp[c]: 4-phospho-l-aspartate; 24abtn[c]: l-2-4-diamino-butanoate; ect-l[c]: ectoine; 2mdi6car[c]: 2-ethyl-4,5-dihydropyrimidine-6-carboxylate; hdect[c]: 5-Hydroxyectoine; nA4aL24dab[c]: N-alpha-acetyl-l-2,4-diaminobutyrate; nG4aL24dab[c]: N-4-Acetyl-l-2,4-diaminobutanoate. b glc-d[c]: d-glucose; f6p[c]: beta-d-fructose-6-phosphate; fdp[c]: beta-d-fructose-1,6-bisphosphate; g6p[c]: d-glucose 6-phosphate; g3p[c]: glyceraldehyde-3-phosphate; gl[c]: d-glucono-1,5-lactone; 6pgl[c]: d-glucono-1,5-lactone 6-phosphate; glcn[c]: d-gluconic-acid; 6pgc[c]: 6-phospho-d-gluconate; 2ddg6p[c]: 2-Dehydro-3-deoxy-6-phospho-d-gluconate; 2-ketgluc[c]: 2-keto-d-gluconic acid; 2dhdglu6[c]: 6-phospho-2-dehydro-d-gluconate