Skip to main content

Table 1 Genomic variation in the E. coli K-12 strains used in this study

From: Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite

Gene

Position

Type

Effect

MG1655a reference

WG1b

MG1655*

Seq+

rpoS

2865477

SNP

STOP

C

T

T

C

yedY

2038457

SNP

Missense

C

A

A

C

ycnA

1335418

SNP

Missense

A

G

G

A

yfcS

1169059

SNP

Missense

T

C

C

T

lamB

4246613

Insertion

unknown

C

C

IS2

C

crl

257899

Insertion

Frame shift

IS1

No insertion

No insertion

IS1

gatABC

2171384

Deletion

Loss of operon

–

Deletion

Deletion

–

glpR

3558477

Deletion

Frame shift

–

No FS

No FS

–

rph

3813902

Insertion

Frame shift

–

G

–

G

  1. aCGSC#: 7740, reference genome NC_000913.3
  2. bCGSC#: 5073, not all identified mutations are listed here
Back to article page

Microbial Cell Factories

ISSN: 1475-2859

Contact us