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Table 3 Bacterial strains and plasmids used in this study

From: Deregulation of purine pathway in Bacillus subtilis and its use in riboflavin biosynthesis

Name

Relevant genotype a

Source/reference

Strains

  

B. subtilis 168

Wide-type strain, trpC2

Lab Stock

E. coli DH5α

Standard cloning strain

Invitrogen

BS77

B. subtilis 168Δupp ribC* ribO* yhcF* yvrH* ywaA*

This study

BS89

BS77, P 43 ::ribA

This study

BS93

BS77, P 43 ::ribA P 43 ::ribG ΔribP1 ΔribO

This study

BS96

BS77, P 43 ::ribA ΔribO

This study

BS102

BS77, P 43 ::ribA ΔpurR

This study

BS103

BS77, P 43 ::ribA ΔpurR P pur (-10*)

This study

BS104

BS77, P 43 ::ribA ΔpurR Δatt

This study

BS106

BS77, P 43 ::ribA ΔpurR Δatt P 43 ::purF

This study

BS107

BS77, P 43 ::ribA ΔpurR Δatt P pur (-10*)

This study

BS110

BS77, P 43 ::ribA ΔpurR Δatt P 43 ::purF D293V K316Q S400W

This study

BS111

BS77, P 43 ::ribA ΔpurR Δatt P 43 ::purF K326Q P410W(E. coli)

This study

Plasmids

  

pUC18

Ampr

Lab Stock

pC194

Cmr, Bacillus cloning vector

Lab Stock

pSS

Ampr, Cmr, pUC18 containing cat-upp cassette

[36]

pSS-P43-ribA-FB

Ampr, Cmr, containing ribA upstream and downstream flanks under P 43 promoter

This study

pSS-P43-ribG-FB

Ampr, Cmr, containing ribG upstream and downstream flanks under P 43 promoter

This study

pSS-ribO-FB

Ampr, Cmr, containing ribO flanks

This study

pSS-purR-FB

Ampr, Cmr, containing purR flanks

This study

pSS-(-10*)-FB

Ampr, Cmr, containing Ppur(-10*) mutant flanks

This study

pSS-att-FB

Ampr, Cmr, containing att flanks

This study

pSS-P43-purF-FB

Ampr, Cmr, containing purF (from B. subtilis) upstream and downstream flanks under P 43 promoter

This study

pSS-purF*(bsu)-FB

Ampr, Cmr, containing purF mutant (from B. subtilis) flanks

This study

pSS-purF*(eco)-FB

Ampr, Cmr, containing purF mutant (from E.coli) upstream and downstream flanks under P 43 promoter

This study

  1. aAntibiotic resistance genes in plasmids were abbreviated as follows: AmpR, ampicillin resistance; CmR, chloramphenicol resistance.