Table 4 Average expression data of upregulated genes during EXP/STA2 comparison based on resultant FDR value from the RP analysis equal or less to 0.05 in compared growth phases during SA production cultures

ykfE

b0220

(ivy) Protein: inhibitor of vertebrate C-type lysozyme

Amino acid metabolism

29.2978

cysK

b2414

Enzyme: cysteine synthase A

Amino acid metabolism

83.0796

gcvH

b2904

Polypeptide: glycine cleavage system H protein

Amino acid metabolism

30.4955

gcvP

b2903

Enzyme: glycine decarboxylase

Amino acid metabolism

33.3045

gcvT

b2905

Enzyme: aminomethyltransferase

Amino acid metabolism

38.3509

gdhA

b1761

Enzyme: glutamate dehydrogenase

Amino acid metabolism

20.9785

glyA

b2551

Enzyme: serine hydroxymethyltransferase

Amino acid metabolism

23.7380

tnaA

_b3708

L-cysteine desulfhydrase/tryptophanase

Amino acid metabolism

139.6125

tnaL

b3707

tna operon leader peptide

Amino acid metabolism

62.9786

ompT

b0565

Enzyme: OM protease VII (OM protein 3b)

Catalytic activity

35.7201

fimC

b4316

Polypeptide: periplasmic chaperone, required for type 1 fimbriae

Cell envelope

63.3469

fimD

b4317

Polypeptide: OM protein; export and assembly of type 1 fimbriae

Cell envelope

25.6637

nlpA

b3661

Polypeptide: lipoprotein-28

Cell envelope

48.3194

ydiQ

b1697

Polypeptide: putative subunit of YdiQ-YdiR flavoprotein

Electron carrier activity

29.9950

nrdA

b2234

Protein: ribonucleoside diphosphate reductase 1, α subunit dimer

Nucleotide/nucleoside metabolism

37.6063

yciW

b1287

Polypeptide: predicted oxidoreductasePolypeptide: predicted oxidoreductase

Out of GOs

116.1438

yieI

b3716

(cbrB) Polypeptide: predicted IM protein

Out of GOs

31.9090

yeeN

b1983

Polypeptide: conserved protein

Regulatory

22.0828

yhiE

b3512

(gadE) Polypeptide: GadE DNA-binding transcriptional activator

Regulatory

46.2077

yhiW

b3515

(gadW) Polypeptide: GadW DNA-binding transcriptional dual regulator

Regulatory

37.7545

hdeA

b3510

Protein: HdeA dimer, inactive form of acid-resistance protein

Stress response

32.4174

hdeB

b3509

Polypeptide: acid stress chaperone

Stress response

56.2185

b0023

b0023

Polypeptide: 30S ribosomal subunit protein S20

Structural molecule activity

45.8728

cysC

b2750

Enzyme: adenylylsulfate kinase

Sulfur metabolism

52.8463

cysD

cysD

Polypeptide: CysD

Sulfur metabolism

236.2573

cysH

b2762

Enzyme: 3′-phospho-adenylylsulfate reductase

Sulfur metabolism

194.5029

cysJ

b2764

Enzyme: sulfite reductase, flavoprotein subunit complex

Sulfur metabolism

62.3545

ydjN

b1729

Polypeptide: predicted transporter

Transport

43.4944

dppB

b3543

Polypeptide: dipeptide ABC transporter - putative membrane subunit

Transport

23.0830

dppF

b3540

Polypeptide: dipeptide ABC transporter - putative ABC binding subunit

Transport

32.6107

fecA

b4291

Polypeptide: ferric citrate OMP FecA

Transport

23.6130

malE

b4034

Maltose ABC transporter - periplasmic binding protein

Transport

230.4651

ompC

b2215

Transporter: OMP C

Transport

61.2832

oppB

b1244

Polypeptide: murein tripeptide ABC transporter/peptide ABC transporter - putative membrane subunit

Transport

44.3550

proV

b2677

Polypeptide: glycine betaine/proline ABC transporter - ATP binding subunit

Transport

34.7488

proW

b2678

Polypeptide: glycine betaine/proline ABC transporter - membrane subunitPolypeptide: glycine betaine/proline ABC transporter - membrane subunit

Transport

35.6683

proX

b2679

Polypeptide: glycine betaine/proline ABC transporter - periplasmic binding protein

Transport

48.2957