ID | Name | Gene | Pressure | Pressure oxygen | ||
---|---|---|---|---|---|---|
 |  |  | FC | Adj. P-val | FC | Adj. P-val |
Transcription regulators | Â | Â | Â | Â | Â | Â |
PP_2088 | RNA polymerase sigma factor SigX | sigX | -1.88 | 1.9 E-03 | -1.65 | 5.6 E-03 |
PP_5108 | RNA polymerase sigma-32 factor | rpoH | +1.49* | 3.6 E-03 | +1.57 | 8.7 E-03 |
PP_1429 | sigma E regulatory protein, MucB/RseB | algN | +1.64 | 1.5 E-03 | +1.46* | 1.3 E-02 |
PP_1863 | transcriptional regulator LysR family | Â | +2.77 | 3.1 E-03 | Â | Â |
PP_2475 | transcriptional regulator TetR family | Â | +1.59 | 7.8 E-03 | +1.75 | 7.5 E-03 |
PP_3439 | transcriptional regulator AraC family | Â | -1.55 | 7.7 E-03 | -1.59 | 5.4 E-03 |
PP_4508 | transcriptional regulator AraC family | Â | -1.45* | 1.2 E-02 | -1.55 | 3.6 E-03 |
Global regulatory proteins | ||||||
PP_4265 | transcriptional regulator Anr | anr | +1.61 | 1.2 E-02 | -1.99 | 2.9 E-02 |
Signal sensing and transduction | ||||||
PP_2258 | sensory box protein | Â | -1.51 | 1.6 E-02 | -1.56 | 3.2 E-02 |
PP_2643 | methyl-accepting chemotaxis transducer | Â | -6.82 | 2.9 E-07 | -15.45 | 8.5 E-08 |
PP_1761 | sensory box protein/GGDEF family protein | Â | -1.77 | 1.9 E-03 | -1.71 | 2.8 E-03 |
PP_1762 | conserved hypothetical protein | Â | -1.45* | 2.9 E-02 | -1.54 | 9.3 E-03 |
PP_2097 | sensory box protein | Â | -1.49* | 5.0 E-03 | -1.52 | 2.0 E-02 |
PP_4405 | sensory box protein | Â | +2.04 | 8.0 E-03 | +1.39* | 8.9 E-02 |
PP_5324 | response regulator | Â | -1.53 | 4.3 E-03 | -1.47* | 9.2 E-03 |
PP_2356 | phytochrome family protein (two-component sensor activity) | Â | -1.73 | 4.6 E-03 | -1.85 | 1.3 E-03 |
PP_4362 | Hpt protein (two-component system) | Â | -1.36* | 7.4 E-02 | -1.52 | 9.0 E-03 |
PP_4503 | winged helix family two component transcriptional regulator | Â | +1.56 | 2.3 E-03 | +1.39* | 8.9 E-02 |
PP_0997 | sigma-54 dependent transcriptional regulator/sensory box protein | Â | -1.46 | 2.0 E-02 | -1.88 | 4.7 E-04 |
Stress response (Chaperones, DNA repair) | ||||||
PP_4179 | heat shock protein HtpG | htpG | +1.65 | 1.0 E-02 | +1.92 | 2.0 E-02 |
PP_4728 | heat shock protein GrpE | grpE | +1.33* | 6.2 E-02 | +1.72 | 7.2 E-03 |
PP_1360 | co-chaperonin GroES | groES | +1.61 | 2.0 E-02 | +1.77 | 8.2 E-02 |
PP_1361 | chaperonin 60Â kDa | groEL | +1.78 | 1.0 E-02 | +2.19 | 6.0 E-03 |
PP_1522 | cold shock protein CspA | cspA-1 | -1.51 | 9.1 E-03 | -1.75 | 3.3 E-03 |
PP_1092 | endonuclease III | nth | -1.67 | 1.6 E-03 | -1.58 | 3.7 E-03 |
PP_1624 | group II intron-encoding maturase | Â | -1.68 | 1.3 E-03 | -1.73 | 1.2 E-03 |
PP_1630 | RecX protein | recX | +1.54 | 1.5 E-03 | +1.53 | 1.6 E-02 |
PP_0483 | excinuclease ABC A subunit | uvrA | Â | Â | -1.67 | 6.1 E-03 |
PP_2295 | antirestriction protein, putative | Â | -1.44* | 9.1 E-03 | -1.51 | 5.4 E-03 |
PP_2326 | universal stress protein family protein | Â | -1.51 | 2.6 E-02 | -1.51 | 1.3 E-02 |
Cell envelope | ||||||
PP_0267 | outer membrane ferric siderophore receptor putative | Â | +1.54 | 1.2 E-02 | +1.73 | 6.6 E-03 |
PP_0504 | outer membrane protein OprG | oprG | +2.55 | 5.8 E-04 | -3.39 | 3.1 E-04 |
PP_1185 | outer membrane protein H1 | oprH | +6.63 | 2.9 E-04 | +4.76 | 1.1 E-04 |
PP_3293 | conserved hypothetical protein (predicted ion channel) | Â | -1.47* | 4.5 E-03 | -1.74 | 6.4 E-03 |
PP_4454 | opine ABC transporter permease protein putative | Â | +1.95 | 2.6 E-03 | +1.36 | 4.6 E-02 |
PP_4465 | porin putative | Â | +2.33 | 1.9 E-03 | +1.60 | 1.1 E-01 |
PP_2445 | integral membrane protein TerC | Â | -1.95 | 1.9 E-03 | -2.25 | 1.3 E-03 |
PP_1150 | membrane protein putative | Â | Â | Â | -4.14 | 3.1 E-04 |
PP_4592 | membrane protein putative | Â | -1.74 | 3.1 E-03 | -2.20 | 1.9 E-03 |
PP_0916 | transporter LysE family | Â | Â | Â | +1.83 | 1.6 E-03 |
PP_1068 | amino acid ABC transporter ATP-binding protein | Â | Â | Â | +1.80 | 1.3 E-03 |
PP_3023 | amino acid efflux protein putative | Â | Â | Â | +1.51 | 6.4 E-03 |
PP_5073 | conserved hypothetical protein (periplasmic protein) | Â | +5.70 | 1.9 E-03 | +5.98 | 8.1 E-06 |
PP_4841 | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative | Â | +1.95 | 8.5 E-03 | Â | Â |
PP_4842 | branched-chain amino acid ABC transporter, permease protein, putative | Â | +3.07 | 4.9 E-03 | Â | Â |
PP_5233 | ammonium transporter | amtB | +1.87 | 8.0 E-03 | Â | Â |
PP_4867 | extracellular ligand-binding receptor | Â | +1.79 | 3.3 E-03 | Â | Â |
PP_1076 | glycerol uptake facilitator protein | glpF | +2.23 | 3.0 E-03 | +2.03 | 4.7 E-04 |
PP_2454 | ribose ABC transporter | rbsB | +1.88 | 1.4 E-02 | +3.81 | 5.4 E-05 |
PP_2119 | ABC efflux tranporter/ATP-binding protein | Â | -2.19 | 4.1 E-03 | -2.10 | 1.2 E-03 |
PP_0508 | conserved hypothetical protein (same operon as efflux ABC transporter ATP-binding prot.) | Â | +2.55 | 8.8 E-03 | +3.36 | 1.8 E-02 |
PP_5307 | biopolymer transport protein ExbD | exbD | Â | Â | +2.30 | 1.8 E-03 |
PP_0906 | multidrug efflux RND transporter putative | Â | -2.11 | 1.4 E-04 | -2.19 | 2.1 E-03 |
PP_0033 | sugar transferase putative | Â | -1.74 | 1.9 E-03 | -2.20 | 9.6 E-03 |
PP_3422 | lytic transglycosylase | ltg | -1.74 | 1.9 E-03 | -1.97 | 9.9 E-04 |
PP_4897 | N-acetylmuramoyl-L-alanine amidase | Â | +1.67 | 3.6 E-03 | Â | Â |
PP_4384 | flagellar basal body L-ring protein | Â | -1.48* | 5.6 E-03 | Â | Â |
Secretion systems | ||||||
PP_0806 | surface adhesion protein putative (same operon as type I secretion system) | Â | -1.58 | 6.2 E-03 | -1.39 | 5.2 E-02 |
PP_1055 | type II secretion pathway protein GspN | gspN | +1.52 | 3.1 E-03 | Â | Â |
PP_3087 | excinuclease ABC A subunit putative (type VI) | Â | +1.64 | 3.1 E-03 | +2.27 | 1.7 E-03 |
PP_3093 | conserved hypothetical protein (type VI) | Â | +1.65 | 6.1 E-03 | +2.39 | 3.6 E-03 |
PP_3094 | hypothetical protein (type VI) | Â | +1.61 | 1.0 E-02 | +2.60 | 3.5 E-05 |
PP_3095 | chaperone-associated ATPase putative (type VI) | Â | +1.60 | 2.0 E-02 | +1.79 | 5.6 E-03 |
PP_3096 | hypothetical protein (type VI) | Â | +1.60 | 1.1 E-02 | +1.97 | 2.4 E-02 |
PP_3098 | conserved hypothetical protein (type VI) | Â | Â | Â | +2.27 | 2.3 E-04 |
PP_3099 | hypothetical protein (type VI) | Â | +1.65 | 1.5 E-02 | +2.00 | 1.1 E-02 |
PP_3100 | conserved hypothetical protein (type VI) | Â | +2.25 | 2.9 E-04 | +2.69 | 9.6 E-04 |
PP_3782 | hypothetical protein | Â | +1.55 | 1.3 E-02 | +1.91 | 7.6 E-04 |
PP_3783 | conserved hypothetical protein | Â | +1.60 | 2.7 E-03 | +1.95 | 2.8 E-04 |
PP_3784 | conserved domain protein | Â | Â | Â | +1.78 | 7.7 E-03 |
PP_3785 | hypothetical protein | Â | +1.65 | 1.0 E-02 | +1.87 | 3.2 E-03 |
PP_3786 | aminotransferase | Â | +1.45* | 6.2 E-02 | +1.78 | 7.3 E-03 |
PP_3787 | hypothetical protein | Â | +2.10 | 5.3 E-03 | +2.35 | 9.2 E-04 |
PP_3788 | non-ribosomal peptide synthetase putative | Â | +2.35 | 3.7 E-03 | +2.79 | 4.2 E-05 |
PP_3790 | diaminopimelate epimerase | dapF | Â | Â | +1.99 | 1.4 E-03 |
Biosynthetic metabolism (amino acids - CO2 production/consumption - glutamate metabolism) | ||||||
PP_1143 | 3-hydroxyisobutyrate | Â | -1.69 | 1.0 E-02 | -1.95 | 1.8 E-03 |
PP_4617 | leucine dehydrogenase | Â | -1.77 | 1.9 E-03 | -1.62 | 3.0 E-03 |
PP_4794 | leucyl-tRNA synthetase | leuS | -1.92 | 3.4 E-04 | -1.73 | 7.5 E-03 |
PP_0432 | N-acetyl-gamma-glutamyl-phosphate reductase | argC | Â | Â | +2.03 | 1.7 E-03 |
PP_0997 | sigma-54 dependent transcriptional regulator/sensory box protein | Â | -1.46* | 2.0 E-02 | -1.88 | 4.7 E-04 |
PP_0999 | carbamate kinase | arcC | Â | Â | -1.72 | 1.3 E-03 |
PP_1000 | ornithine carbamoyltransferase | argI | Â | Â | -1.53 | 9.6 E-03 |
PP_1001 | arginine deiminase | arcA | Â | Â | -1.73 | 1.9 E-03 |
PP_1002 | arginine/ornithine antiporter | arcD | Â | Â | -1.66 | 1.2 E-02 |
PP_1079 | arginine deiminase | argF | Â | Â | +1.69 | 3.9 E-03 |
PP_3775* | sarcosine oxidase, putative | Â | Â | Â | +1.42 | 6.8 E-03 |
PP_3776 | rarD protein | rarD-3 | Â | Â | +1.71 | 3.6 E-03 |
PP_3777 | hypothetical protein | Â | Â | Â | +1.52 | 2.4 E-02 |
PP_3780 | hypothetical protein | Â | +1.44* | 8.0 E-03 | +1.72 | 1.4 E-03 |
PP_4594 | cystathionine gamma-lyase | Â | -1.69 | 1.9 E-03 | -1.78 | 1.9 E-02 |
PP_1631 | hypothetical protein (possible lysine decarboxylase) | Â | -1.91 | 3.0 E-03 | -1.62 | 1.3 E-02 |
PP_3662 | decarboxylase family protein (possible lysine decarboxylase) | Â | -1.85 | 4.9 E-03 | -1.69 | 3.9 E-03 |
PP_1389 | carboxyphosphonoenolpyruvate phosphonomutase, putative | Â | -1.54 | 3.7 E-03 | Â | Â |
PP_5346 | pyruvate carboxylase subunit B | oadA | -1.58 | 1.7 E-02 | -1.51 | 1.1 E-01 |
PP_5347 | pyruvate carboxylase subunit A | accC-2 | -2.23 | 1.9 E-03 | -2.41 | 5.6 E-03 |
PP_5075 | glutamate synthase subunit beta | gltD | Â | Â | +1.69 | 1.3 E-02 |
PP_5409 | glucosamine--fructose-6-phosphate aminotransferase | glmS | Â | Â | +1.54 | 1.3 E-02 |
Electron transport | ||||||
PP_4265 | transcriptional regulator Anr | anr | +1.61 | 1.2 E-02 | -1.99 | 2.9 E-02 |
PP_0103 | cytochrome c oxidase subunit II | Â | -1.41* | 1.2 E-02 | -1.67 | 2.3 E-03 |
PP_0104 | cytochrome c oxidase subunit I | Â | Â | Â | -1.68 | 5.6 E-03 |
PP_0111 | electron transport protein SCO1/SenC | Â | -1.46* | 1.3 E-02 | -1.44* | 8.7 E-03 |
PP_0811 | cyoups2 protein | cyoups2 | +1.79 | 1.9 E-03 | +1.95 | 7.2 E-04 |
PP_0812 | cytochrome o ubiquinol oxidase subunit II | cyoA | +1.43* | 1.3 E-02 | +1.59 | 3.0 E-03 |
PP_0813 | cytochrome o ubiquinol oxidase, subunit I | cyoB | Â | Â | +1.41* | 9.6 E-02 |
PP_0816 | protoheme IX farnesyltransferase | cyoE-2 | Â | Â | +1.41* | 2.1 E-02 |
PP_4119 | NADH dehydrogenase I A subunit | nuoA | -1.51 | 2.0 E-02 | -1.66 | 3.6 E-03 |
PP_4202 | electron transfer flavoprotein beta subunit | Â | +1.42* | 6.2 E-03 | +1.82 | 1.4 E-03 |
PP_4250 | cytochrome c oxidase cbb3-type, subunit II | ccoN-1 | +1.51 | 7.2 E-02 | -1.56 | 1.0 E-02 |
PP_4251 | cytochrome c oxidase cbb3-type, subunit II | ccoO-1 | Â | Â | -2.22 | 1.7 E-03 |
PP_4252 | cytochrome c oxidase, cbb3-type, CcoQ subunit | ccoQ-1 | Â | Â | -1.65 | 9.2 E-02 |
PP_4253 | cytochrome c oxidase, cbb3-type, subunit III | ccoP-1 | Â | Â | -1.69 | 2.6 E-02 |
PP_4255 | cytochrome c oxidase cbb3-type, subunit I | ccoN-2 | -1.39* | 3.0 E-02 | -1.55 | 7.4 E-04 |
PP_4870 | azurin | azu | +2.22 | 1.9 E-03 | -1.19 | 2.0 E-01 |
Fe-S cluster assembly | Â | Â | Â | Â | Â | Â |
PP_0841 | iron-sulfur cluster assembly transcription factor IscR | iscR | Â | Â | +1.67 | 2.3 E-03 |
PP_0842 | cysteine desulfurase | iscS-1 | Â | Â | +2.50 | 5.7 E-05 |
PP_0843 | iron-binding protein IscU | iscU | Â | Â | +2.48 | 1.5 E-04 |
PP_0844 | iron-binding protein IscA | iscA | Â | Â | +2.19 | 1.1 E-04 |
PP_0845 | co-chaperone HscB | hscB | Â | Â | +2.46 | 7.6 E-04 |
PP_0846 | chaperone protein HscA | hscA | Â | Â | +1.88 | 1.7 E-02 |
PP_0847 | ferredoxin, 2Fe-2S | Â | Â | Â | +1.72 | 2.2 E-03 |
PP_0848 | conserved hypothetical protein | Â | -1.38 | 4.6 E-02 | +1.52 | 5.2 E-03 |
PP_2378 | yghI protein | yghI | Â | Â | +2.14 | 1.5 E-04 |
PP_1082 | bacterioferritin | bfr | -1.85 | 1.3 E-02 | -4.20 | 1.1 E-05 |
PP_1083 | BFD domain protein (2Fe-2S)-binding domain protein | Â | Â | Â | +2.35 | 1.4 E-04 |
PP_4900 | iron-sulfur cluster-binding, putative | Â | -1.43* | 4.5 E-03 | -1.49* | 7.3 E-02 |
PP_5306 | ferric siderophore transport system protein ExbB | exbB | Â | Â | +1.87 | 3.0 E-02 |
PP_5307 | ferric siderophore transport system inner membrane protein | exbD | Â | Â | +2.30 | 1.8 E-03 |
PP_5308 | TonB family protein | tonB | Â | Â | +1.54 | 2.4 E-02 |
PP_0267 | outer membrane ferric siderophore receptor putative | Â | +1.54 | 1.2 E-02 | +1.73 | 6.6 E-03 |
Detoxification | ||||||
PP_2439 | alkyl hydroxide reductase C subunit | ahpC | +1.87 | 3.8 E-03 | +3.89 | 2.5 E-05 |
PP_3639 | alkylhydroperoxidase | Â | -1.68 | 6.7 E-03 | -1.59 | 2.1 E-03 |
PP_1684 | major facilitator transporter | Â | Â | Â | +1.51 | 7.5 E-03 |
PP_1686 | glutathione peroxidase | Â | Â | Â | +2.11 | 3.1 E-04 |
PP_3444 | glyoxalase/bleomycin resistance protein/dioxygenase | Â | -1.57 | 4.5 E-03 | -1.49* | 2.9 E-02 |
PP_2474 | glutathione S-transferase family protein | Â | +1.69 | 7.2 E-02 | +1.67 | 6.7 E-02 |
PP_3742 | glutathione S-transferase family protein | Â | Â | Â | +1.53 | 5.1 E-03 |