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Table 2 Copy number variation between the S288C and CEN.PK113-7D genomes was estimated by mapping CEN.PK and S288C reads to the S288C genome using BWA [45]

From: De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

CNV S288C coordinates     
CHR start end p -value Log2 (CEN.PK/S288C) CEN.PK CHR Amplified Genes
VII 1064291 1068431 1.01 × 10-100 0.86 VII, III, XI BIO2, IMA1
XV 849425 850253 1.63 × 10-21 0.86 XV, VI RDL1, RDL2
II 805955 808853 3.92 × 10-76 0.89 II, III MAL32, YBR300C
II 801609 805541 6.79 × 10-110 0.93 II, III MAL33, MAL31, MAL32, YBR298C-A
III 90771 93253 2.15 × 10-87 1.07 ? LEU2, NFS1
VIII 553415 556313 2.81 × 10-138 1.27 VIII, XI PHO12, IMD2
  1. Read depth ratios and p-values were calculated using CNV-seq [46]. Regions with a significantly higher read depth in the CEN.PK113-7D genome are reported in this table.