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Table 3 Strains and plasmids used in this study

From: Rational improvement of the engineered isobutanol-producing Bacillus subtilis by elementary mode analysis

Name

Relevant genotype

Source

Strains

  

E. coli JM109

recA 1, endA 1, gyrA 96, thi-1, hsdR 17, supE 44, relA 1, Δ(lac-proAB)/F’[traD 36, proAB+, lacIq, lacZ ΔM 15]

TransGen Biotech

BSUL03

ΔamyE::(P43::kivd-adh 2), P43::ilvD-ilvC-alsS; Spcr, Emr

[6]

BSUL04

BSUL03 with lactate dehydrogenase inactivation (Δldh); Spcr, Emr, Kmr

This study

BSUL05

BSUL04 with pyruvate dehydrogenase complex E2 subunit inactivation (Δldh ΔpdhC); Spcr, Emr, Kmr, Tetr

This study

Plasmids

  

pUC18

E. coli cloning vector; Ampr

Laboratory stock

pDK

B. subtilis integration vector with amyE locus; Ampr, Kmr

BGSC [50]

pHY300PLK

E. coli-B. subtilis cloning vector; Ampr, Tetr

Takara

pUCL

pUC18 containing ldh fragment of B. subtilis, Ampr

This study

pUCLKm

pUCL containing kanamycin resistance cassettes from pDK; Ampr, Kmr

This study

pUCP01

pUC18 containing homology arm pdhC 1 fragment of B. subtilis; Ampr

This study

pUCP02

pUCP01 containing homology arm pdhC 2 fragment of B. subtilis; Ampr

This study

pUCPTet

pUCP02 containing tetracycline resistance cassettes from pHY300PLK; Ampr, Tetr

This study