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Table 1 Strains and plasmids used in this study

From: Microaerobic insights into production of polyhydroxyalkanoates containing 3-hydroxyhexanoate via native reverse β-oxidation from glucose in Ralstonia eutropha H16

Strains/plasmids

Description/genotype

References

Strains

Escherichia coli

  S17-1

thi pro hsdR recA chromosomal RP4; Tra+; Tmpr Str/Spcr

Simon et al. [33]

Ralstonia eutropha

 H16

Wild type

DSM 428

 NSDG-GG

H16 derivative; ∆phaC::phaCNSDG,

ΔnagR, nagE(G793C), PA2858 -glpFKEc-h16_A2858

Zhang et al. [15]

 ΔB1

NSDG-GG derivative; ΔphaB1Re

Mifune et al. [34]

 ΔB1ΔB3

NSDG-GGΔB1 derivative; ΔphaB3

This study

 ΔB1ΔB3ΔB2-C2

NSDG-GGΔB1ΔB3 derivative; ΔphaB2-phaC2

This study

 ΔB1Δhad

NSDG-GGΔB1 derivative; Δhad

This study

 ΔB1ΔpaaH1

NSDG-GGΔB1 derivative; ΔpaaH1

This study

 ΔB1Δcrt2

NSDG-GGΔB1 derivative; Δcrt2

This study

 ΔB1ΔhadΔpaaH1

NSDG-GGΔB1Δhad derivative; ΔpaaH1

This study

 ΔB1ΔhadΔpaaH1Δcrt2

NSDG-GGΔB1ΔhadΔpaaH1 derivative; Δcrt2

This study

 ∆B1∆A3330

NSDG-GGΔB1 derivative; Δh16_A3330

This study

 ΔB1ΔbktB

NSDG-GGΔB1 derivative; ΔbktB

This study

 ΔB1ΔphaJ4a

NSDG-GGΔB1 derivative; ΔphaJ4a

This study

 ∆B1∆fadB’

NSDG-GGΔB1 derivative; ΔfadB’

This study

Plasmids

 pK18mobsacB

pMB1 ori, mob, Kanr, sacB

Schafer et al. [35]

 pk18msΔB3

pK18mobsacB derivative; phaB3 del

Insomphun et al. [14]

 pk18msΔB2-C2

pK18mobsacB derivative; phaB2-phaC2 del

Subagyo et al. [37]

 pk18msΔhad

pK18mobsacB derivative; had del

Segawa et al. [20]

 pk18msΔpaaH1

pK18mobsacB derivative; paaH1 del

Segawa et al. [20]

 pk18msΔcrt2

pK18mobsacB derivative; crt2 del

Segawa et al. [20]

 pk18msΔA3330

pK18mobsacB derivative; h16_A3330 del

This study

 pk18msΔbktB

pK18mobsacB derivative; bktB del

This study

 pk18msΔphaJ4a

pK18mobsacB derivative; phaJ4a del

Kawashima et al. [25]

 pK18ms∆fadB’

pK18mobsacB derivative; fadB’ del

Insomphun et al. [12]

 pBPP-ccrMe-phaJ4a-emd

pBBR ori, mob, PphaP1, ccrMe, phaJ4a, emdMm, TrrnB

Insomphun et al. [14]

 pBPP-ccrMe-phaJAc-emd

pBBR ori, mob, PphaP1, ccrMe, phaJAc, emdMm, TrrnB

Insomphun et al. [14]

  1. The postfix del indicates constructs for targeted gene deletion. Ac, Aeromonas caviae; Me, Methylorubrum extorquens; Mm, Mus musculus. phaCNSDG, a gene encoding N149S/D171G mutant of PHA synthase from A. caviae