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Table 1 Summary of experimental setup designed with DoE (DX, StatSoft)

From: ‘Mother(Nature) knows best’ – hijacking nature-designed transcriptional programs for enhancing stress resistance and protein production in Yarrowia lipolytica; presentation of YaliFunTome database

Design type: face-centered

Central composite design

Runs: 104 for each of 125 TF = 13 000 in duplicate

 = 26,000 readouts on FL (fluorescence) and growth (OD600)

The central variants were repeated five times. The order of culture execution was randomized

Process factors

Categoric: A, B, C Numeric: d, e

Factor

Name

Units

Change

Type

Minimum

Maximum

Coded Low

Coded High

Mean

Std. Dev

A

AIR “limiting”

0/1

Easy

Categoric

Low

High

  

Levels: 2

B

Carbon source

Glu/Gly

Easy

Categoric

Glucose

Glycerol

  

Levels: 2

C

Nitrogen source

i/o

Easy

Categoric

Inorganic:

Ammonium Sulfate

Organic:

Casamino Acid Hydrolysate

  

Levels: 2

d

pH

pH

Hard

Numeric

3

7

− 1 → 3

 + 1 → 7

5

2.83

e

Temperature

°C

Hard

Numeric

22

34

− 1 → 22.00

 + 1 → 34.00

27.1

5.443