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Table 2 Binding free energy (kcal/mol) of protein/ligand complexes and amino acids residues interacting with the ligand

From: Proteome profiling of enriched membrane-associated proteins unraveled a novel sophorose and cello-oligosaccharide transporter in Trichoderma reesei

Ligand

Binding free energy Tr44175_ligand complex

Amino acids residues interacting with the ligand

Glucose

− 5,5

Phe54, Tyr174, Gln276, Asp277, Gln298, Asn302

Cellobiose

− 6,1

Phe53, Phe54, Ser57, Ile78, Tyr170, Ala171, Tyr174, Pro280, Gln276, Asp277, Gln298, Asn302

Cellotriose

− 7,1

Phe54, Ser57, Ile78, Leu82, Gln276, Pro280, Gln298, Ser397, Tyr174, Asp277, Ser394, Thr398

Cellotetraose

− 7,2

Phe54, Leu58, Val60, Thr75, Trp76, Ile78, Tyr174, Pro280, Thr281, Ser57, Thr79, Gln276, Asp277, Ser394, Ser397, Thr398

Sophorose

− 6,4

Phe54, Tyr170, Tyr174, Pro280, Ala301, Gln355, Gln276, Asp277, Gln298, Asn302