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Table 6 The maximum rates of succinate growth-coupled production in iML1515 in rich medium (Strain0 in LB medium)

From: FastKnock: an efficient next-generation approach to identify all knockout strategies for strain optimization

Number of knocked out reactions

Deleted reactions

Biomass formation rate (h−1)

Succinate production rate (mmol.gDW−1 h−1)

Deleted genes

Co-Knockout reactions

Single

ARGDC

1.08

19.72

b4117

–

Double

ARGDC, FADRx

1.05

22.09

b4117, b3844

FADRx, FE3Ri, FLVRx

Triple

NDPK5, ASPTA, ARGDC

1.03

28.14

b0474, b2518, b0928, b4054, b4117

ADK1, NDPK2, ADNK1, NDPK3, NDPK6, DADK, ADK4, NDPK1, ADK3, NDPK4, NDPK7, NDPK8, TYRTA, PHETA1, LEUTAi

Quadruple

NDPK5, PFL, LDH_D, ACALD

0.75

40.97

b0474, b2518, b2579, b3952, b0902, b3951, b0903, b3114, b1380, b0351, b1241

ADK1, NDPK2, ADNK1, NDPK3, NDPK6, DADK, ADK4, NDPK1, ADK3, NDPK4, NDPK7, NDPK8, OBTFL, ALCD2x, ALCD19