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Table 3 The guaranteed rate of succinate growth-coupled production in in iJR904 (Strain0 in CM2 cultivation medium)

From: FastKnock: an efficient next-generation approach to identify all knockout strategies for strain optimization

Number of knocked out reactions

Deleted reactions

Biomass formation rate (h−1)

Succinate production rate (mmol.gDW−1 h−1)

SoGC (h−1)

Deleted genes

Co-knockout reactions

min

max

Single

ADHEr

0.16

5.11

9.50

1.41E-2

b1241

LCADi_copy2

Double

ADHEr, LDH_D

0.15

8.08

9.51

1.43E-2

b1241, b2133, b1380

LCADi_copy2

Triple

ADHEr, LDH_D, PFL

0.12

11.08

12.73

1.53E-2

b1241, b2133, b1380, b3114, b0902, b3951

LCADi_copy, OBTFL

Quadruple

ADHEr, LDH_D, PFL, THD2

0.11

12.29

13.01

2.58E-2

b1241, b2133, b1380, b3114, b0902, b3951, b1602

LCADi_copy, OBTFL

Quintuple

ADHEr, LDH_D, GLUDy, PFL, THD2

0.10

12.34

13.06

2.61E-2

b1241, b2133, b1380, b1761, b3114, b0902, b3951, b1602

LCADi_copy, OBTFL