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Table 2 Differential abundant species identified across comparisons

From: Effect of minocycline, methyl prednisolone, or combination treatment on the colonic bacterial population in a state of colonic inflammation using the murine dextran sulfate sodium model

 

TAXA NAME

LOG2FC

LOGCPM

PVALUES

FDR

C vs. U

Adlercreutzia_mucosicola

− 1.86

0.286

6.79E-05

0.004

uncultured_actinobacterium

− 1.85

0.317

0.000166

0.004

uncultured_organism

− 7.03

1.26

0.000237

0.00522

Lactobacillus_intestinalis

2.77

0.618

0.00116

0.0181

uncultured_Parcubacteria

− 1.31

0.312

0.00184

0.0195

Adlercreutzia_muris

5.53

1.58

0.00573

0.0432

C vs. V

Helicobacter_mastomyrinus

− 4.46

0.662

5.14E-05

0.00339

uncultured_organism

− 9.07

1.26

2.94E-05

0.00339

unidentified

− 7.8

1.16

5.13E-05

0.00339

Lactobacillus_intestinalis

2.76

0.613

0.00114

0.0351

uncultured_Anaeroplasma

− 5.91

1.34

0.00133

0.0351

Massiliomicrobiota_timonensis

− 2.23

0.556

0.00245

0.0404

P vs. U

Adlercreutzia_mucosicola

− 1.86

0.286

6.79E-05

0.004

Helicobacter_mastomyrinus

4.11

0.658

9.65E-05

0.004

uncultured_actinobacterium

− 1.85

0.317

0.000166

0.004

gut_metagenome

7.82

1.69

0.000941

0.0181

uncultured_Clostridiales

5.1

1.12

0.00106

0.0181

uncultured_Clostridium

2.93

0.64

0.001

0.0181

uncultured_Anaeroplasma

5.87

1.34

0.00139

0.0193

Helicobacter_typhlonius

9.42

2.3

0.00213

0.0195

metagenome

− 1.35

0.33

0.00215

0.0195

Staphylococcus_carnosus

− 8.09

1.97

0.00212

0.0195

uncultured_Clostridia

5.84

1.37

0.00165

0.0195

uncultured_Parcubacteria

− 1.31

0.312

0.00184

0.0195

unidentified

4.64

1.17

0.00264

0.0225

P vs. V

None

M vs. U

Adlercreutzia_mucosicola

− 1.86

0.286

6.79E-05

0.004

uncultured_actinobacterium

− 1.85

0.317

0.000166

0.004

uncultured_Clostridium

3.9

0.64

0.000117

0.004

Lachnospiraceae_bacterium

5.6

1.25

0.00115

0.0181

metagenome

− 1.35

0.33

0.00215

0.0195

uncultured_Parcubacteria

− 1.31

0.312

0.00184

0.0195

Firmicutes_bacterium

3.74

1.02

0.00432

0.0356

M vs. V

Helicobacter_mastomyrinus

− 4.46

0.662

5.14E-05

0.00339

uncultured_organism

− 5.96

1.26

0.000804

0.0303

Massiliomicrobiota_timonensis

− 2.23

0.556

0.00245

0.0404

unidentified

− 4.67

1.16

0.0024

0.0404

uncultured_Anaeroplasma

− 5.17

1.34

0.00319

0.0496

V vs. U

Adlercreutzia_mucosicola

-1.86

0.286

6.79E-05

0.004

Helicobacter_mastomyrinus

4.12

0.658

9.48E-05

0.004

uncultured_actinobacterium

− 1.85

0.317

0.000166

0.004

uncultured_Desulfovibrionales

3.44

0.777

0.00128

0.0187

uncultured_Anaeroplasma

5.57

1.34

0.00198

0.0195

unidentified

4.96

1.17

0.00171

0.0195

Massiliomicrobiota_timonensis

2.21

0.55

0.00242

0.0213

Helicobacter_typhlonius

8.27

2.3

0.00485

0.0388

Staphylococcus_carnosus

− 6.92

1.97

0.00562

0.0432

Lachnospiraceae_bacterium

4.3

1.25

0.00619

0.0454

  1. Taxa common to the treatment group (Minocycline or Methyl Prednisolon or combination) vs. vehicle-treated and untreated vs. vehicle-treated group samples are represented in bold
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Microbial Cell Factories

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