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Table 1 Differential abundant genera identified across comparisons

From: Effect of minocycline, methyl prednisolone, or combination treatment on the colonic bacterial population in a state of colonic inflammation using the murine dextran sulfate sodium model

 

TAXA NAME

LOG2FC

LOGCPM

PVALUES

FDR

C vs. U

Dorea

1.97

0.237

8.62E-06

0.00348

DNF00809

− 1.86

0.32

0.000171

0.00866

Rikenellaceae_RC9_gut_group

− 7.12

1.16

0.000107

0.00866

RBG_13_54_9

− 1.34

0.27

0.000558

0.015

Monoglobus

1.4

0.291

0.000727

0.0173

Candidatus_Kaiserbacteria

− 1.3

0.312

0.0019

0.0285

Paracoccus

− 1.47

0.369

0.00263

0.0295

Not_Assigned

2.6

0.683

0.00344

0.0347

C vs. V

Dorea

1.97

0.237

8.62E-06

0.00138

Eubacterium_siraeum_group

− 5.32

0.677

1.37E-05

0.00138

Rikenellaceae_RC9_gut_group

− 9.16

1.16

1.27E-05

0.00138

Erysipelatoclostridium

− 6.04

1.17

0.000413

0.0185

Clostridia_vadinBB60_group

− 7.43

1.54

0.000712

0.0226

Monoglobus

1.4

0.291

0.000727

0.0226

Odoribacter

− 5.68

1.24

0.00104

0.0262

Anaeroplasma

− 5.91

1.34

0.00133

0.0316

P vs. U

Clostridia_vadinBB60_group

8.99

1.54

0.000167

0.00866

DNF00809

− 1.86

0.32

0.000171

0.00866

ASF356

6.28

1.26

0.000551

0.015

RBG_13_54_9

− 1.34

0.27

0.000558

0.015

Eisenbergiella

2.76

0.563

0.000619

0.0156

Anaeroplasma

5.86

1.34

0.00141

0.0284

Candidatus_Kaiserbacteria

− 1.3

0.312

0.0019

0.0285

GCA_900066575

3.08

0.74

0.00196

0.0285

Staphylococcus

− 8.11

1.93

0.00183

0.0285

uncultured

6.69

1.61

0.00192

0.0285

Weissella

− 12.9

3.11

0.00202

0.0285

Defluviicoccus

− 1.35

0.331

0.00222

0.0286

Paracoccus

− 1.47

0.369

0.00263

0.0295

Rodentibacter

1.94

0.484

0.00253

0.0295

Not_Assigned

2.6

0.683

0.00343

0.0347

P vs. V

Eisenbergiella

2.76

0.563

0.000619

0.0226

Eubacterium_siraeum_group

− 3.19

0.677

0.000821

0.0237

Rodentibacter

1.94

0.484

0.00253

0.0487

M vs. U

DNF00809

− 1.86

0.32

0.000171

0.00866

GCA_900066575

3.89

0.74

0.000372

0.015

RBG_13_54_9

− 1.34

0.27

0.000558

0.015

Rikenellaceae_RC9_gut_group

− 5.93

1.16

0.000443

0.015

Lachnospiraceae_NK4A136_group

7.14

1.56

0.00103

0.022

Candidatus_Kaiserbacteria

− 1.3

0.312

0.0019

0.0285

Colidextribacter

5.91

1.45

0.00226

0.0286

Defluviicoccus

− 1.35

0.331

0.00222

0.0286

Paracoccus

− 1.47

0.369

0.00263

0.0295

Not_Assigned

2.68

0.683

0.00283

0.0309

M vs. V

Eubacterium_siraeum_group

− 5.32

0.677

1.37E-05

0.00138

Rikenellaceae_RC9_gut_group

− 7.97

1.16

4.20E-05

0.00283

Erysipelatoclostridium

− 6.04

1.17

0.000413

0.0185

Candidatus_Saccharimonas

− 4.54

1.14

0.00252

0.0487

V vs. U

Eubacterium_siraeum_group

4.83

0.677

3.14E-05

0.00635

DNF00809

− 1.86

0.32

0.000171

0.00866

Clostridia_vadinBB60_group

7.86

1.54

0.00047

0.015

Erysipelatoclostridium

5.33

1.17

0.00102

0.022

Anaeroplasma

5.58

1.34

0.00197

0.0285

Not_Assigned

2.82

0.683

0.00204

0.0285

Incertae_Sedis

4.41

1.16

0.00342

0.0347

RBG_13_54_9

− 1.01

0.27

0.00386

0.038

Lachnospiraceae_NK4A136_group

5.61

1.56

0.00493

0.0474

Staphylococcus

− 6.88

1.93

0.00518

0.0486

  1. Taxa common to the treatment group (Minocycline or Methyl Prednisolon or combination) vs. vehicle-treated and untreated vs. vehicle-treated group samples are represented in bold
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Microbial Cell Factories

ISSN: 1475-2859

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