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Table 3 List of plasmids and strains used in this study

From: Engineering the synthetic β-alanine pathway in Komagataella phaffii for conversion of methanol into 3-hydroxypropionic acid

Plasmids/strains

Modules/genotype

References

Plasmids

 BB1_12_pAOX1

PAOX1, KanR+

[5]

 BB1_12_pFDH1

PFDH1, KanR+

 BB1_12_pPOR1

PPOR1, KanR+

 BB1_12_pPDC1

PPDC1, KanR+

 BB1_23

Ø, KanR+

 BB1_34_RPS3tt

RPS3tt, KanR+

 BB1_34_ScCYC1tt

ScCYC1tt, KanR+

 BB1_34_TDH3tt

TDH3tt, KanR+

 BB2_BC

Ø, AmpR+

 pCC1-4k_TcPAND

panD+, T. castaneum gene encoding for PANDTc enzyme

GenScript Biotech

 pCC1-4k_BcBAPAT

yhxA+, B. cereus gene encoding for BAPATBc

 BB1_23_EcYDFG

ydfG+, E. coli str. K-12 gene encoding for YDFGEc

 BB1_23_PseFDH(V9)

fdh+, Pseudomonas sp. (strain 101) gene encoding for FDHPse(V9)(A199G/D222Q/S381V/C256A/H380K)

 BB2_BC_TcPAND

PAOX1-PANDTc-RPS3tt

This work

 BB2_BC_BcBAPAT

PFDH1-BAPATBc-ScCYC1tt

 BB2_BC_EcYDFG

PPOR1-YDFGEc-TDH3tt

PPDC1-YDFGEc-TDH3tt

 BB2_BC_PseFDH(V9)

PFDH1-FDH(V9)Pse-TDH3tt

 BB3nK_ext_AD

Ø, KanR+

[6]

 BB3nK_ext_AD_TcPAND

5′-HR_PAOX1-PANDTc-RPS3tt_3′-HR(RGI2)

This work

5′-HR_PAOX1-PANDTc-RPS3tt_3′-HR(pGAPUP)

 BB3nK_ext_AD_BcBAPAT

5′-HR_PFDH1-BAPATBc-ScCYC1tt_3′-HR(pTEF1-αUP)

 BB3nK_ext_AD_EcYDFG

5′-HR_PPOR1-YDFGEc-TDH3tt_3′-HR(pFLD1UP)

5′-HR_PPDC1-YDFGEc-TDH3tt_3′-HR(pFLD1UP)

 BB3nK_ext_AD_PseFDH(V9)

5′-HR_PFDH1-FDH(V9)Pse-TDH3tt_3′-HR(pAOX1UP)

 BB3cN_pGAP_23*_pLAT1_Cas9

PGAP_Ø_PLAT1_Cas9, NrsR+

[6]

 BB3cK_pGAP_23*_pLAT1_Cas9

PGAP_Ø_PLAT1_Cas9, KanR+

 BB3cH_pGAP_23*_pLAT1_Cas9

PGAP_Ø_PLAT1_Cas9, HygR+

 BB3cK_pGAP_gRNA1(RGI2)_pLAT1_Cas9

PGAP_gRNA1(RGI2)_PLAT1_Cas9, KanR+

This work

 BB3cH_pGAP_gRNA1(pGAPUP)_pLAT1_Cas9

PGAP_gRNA1(PGAPUP)_PLAT1_Cas9, HygR+

 BB3cK_pGAP_gRNA2(pTEF1-αUP)_pLAT1_Cas9

PGAP_gRNA2(PTEF1-αUP)_PLAT1_Cas9, KanR+

 BB3cN_pGAP_gRNA1(pFLD1UP)_pLAT1_Cas9

PGAP_gRNA1(PFLD1UP)_PLAT1_Cas9, NrsR+

 BB3cN_pGAP_gRNA1(pAOX1UP)_pLAT1_Cas9

PGAP_gRNA1(PAOX1UP)_PLAT1_Cas9, NrsR+

K. phaffii strains

 CBS7435

Wild-type

CBS, Centraalbureau voor Schimmelcultures

 PpCβ10

PAOX1_PANDTc + PFDH1_BAPATBc + PPOR1_YDFGEc

This work

 PpCβ20

PAOX1_PANDTc + PFDH1_BAPATBc + PPDC1_YDFGEc

 PpCβ11

2x(PAOX1_PANDTc) + PFDH1_BAPATBc + PPOR1_YDFGEc

 PpCβ21

2x(PAOX1_PANDTc) + PFDH1_BAPATBc + PPDC1_YDFGEc

 PpCβ20-P

PpCβ20 + PFDH1_FDH(V9)Pse

 PpCβ21-P

PpCβ21 + PFDH1_FDH(V9)Pse