Table 2 Oligonucleotides used in this study
Name | Sequence 5'-3' | Metabolite, gene or flanking region |
|---|---|---|
bacAF1 | GTGAAGGCCGTACTTTTGTCTGGC | Bacilysin, right |
bacAR1 | GGGGGGAAATACAGCTTCAGGGC | Bacilysin, right |
beaBF1 | GCCCGAAACGGCAGCGCCTG | Bacillaene, left |
beaBR1 | CGGAATGGAGGCTTTGATCCTCTG | Bacillaene, left |
beaSF1 | CGCAAAAGCTCTTCGACCGCCGTC | Bacillaene, right |
beaSR1 | CTCTCGTGCCGTCGGAATATCCGC | Bacillaene, right |
dfnMF1 | CGGAGTGAAACCGTGCCGGGATAAAGA | Difficidin, left |
dfnMR1 | GACCATTCAGAGCGGAAAGCTCC | Difficidin, left |
dfnAF1 | GGTGCGGCATGAAGATTTGAGATCACCG | Difficidin, right |
dfnAR1 | GGAGAGCACTTCAATTCCGACGTTGACC | Difficidin, right |
dhbFF3 | GCCTAGATGACATGGCGGCGG | Bacillibactin, left |
dhbFR2 | GCCGCCGTAGTCGTCCGTGAAGACCG | Bacillibactin, left |
dhbAF1 | CGCCTAAAGTAGCGCCGCCATCAACGC | Bacillibactin, right |
dhbAR2 | CCGCGATGGAGCGGGATTATCCG | Bacillibactin, right |
fenAF1 | CCTCGCTCCGCATGATCTTTTGG | Fengycin, left |
fenAR1 | CGGGAGCACGGTGGCAATGTG | Fengycin, left |
fenEF1 | GTTTCATGGCGGCGAGCACG | Fengycin, right |
fenER1 | GATTCGCGGGAAGCGGATTGAGC | Fengycin, right |
ituF4 | CTGCCTGCGTATATGATTCCGGC | Iturin A, left |
ituR3 | CCGTGATGATGCCGTTCTTCAATCC | Iturin A, left |
ituF1 | CGCCCGTGAAGGAGCAGCCG | Iturin A, right |
ituR1 | GCCAGGAAGCGGGGCTTCAC | Iturin A, right |
mlnAF1 | CGGCTGCGGGGGAAAAGATCCG | Macrolactin, left |
mlnAR1 | CAGCATCAGGGCGTGTATGACCTTC | Macrolactin, left |
mlnIF1 | GGAAGAAAAACAGTCGAGGCGATGCTG | Macrolactin, right |
mlnIR1 | GAGAAGCTCCGCCGTCACCAGTG | Macrolactin, right |
srfAAF1 | GCCCGTGAGCCGAATGGATAAG | Surfactin, left |
srfAAR1 | CCGTTTCAGGGACACAAGCTCCG | Surfactin, left |
srfADF1 | CCGTTCGCAGGAGGCTATTCC | Surfactin, right |
srfADR1 | CGCCCATCCTGCTGAAAAAGCG | Surfactin, right |
ywfGF1 | GAAGAGATCCTCGCCAAACATCCGG | Bacilysin, left |
ywfGR1 | GAGCGGATTGATCCCGCCGTC | Bacilysin, left |
nrsAR1 | GGAGGAGCTAATGACCCATCC | nrsAB |
nrsBF2 | CTCCTATGGAGCACGATCCAAC | nrsAB |
nrsCF1 | GGAATGCTGGTCCATTCAGCC | nrsC |
nrsCR1 | CAATCGCCAGTATCCTCGCAG | nrsC |
nrsDF1 | CCCAACTTATTTCACCGCCC | nrsD |
nrsDR1 | GTAAGGCTCGGCATTGAATCGAG | nrsD |
nrsEF1 | GGTGTGAAATCGTTGCGTTGG | nrsED |
nrsER1 | CAACAGGTAGCGTATGCGTGC | nrsED |
nrsFF1 | CGTACAGCCGGGCCAACTTCAAC | nrsF |
nrsFR1 | GGGCGTGCATATTAGGTGGAATC | nrsF |
recAf | TGAGTGATCGTCAGGCAGCCTTAG | recA |
recAr | TTCTTCATAAGAATACCACGAACCGC | recA |
recNf | CTTTTGCGATCAGAAGGTGCGTATCCG | recN |
recNr | GCCATTATAGAGGAACTGACGATTTC | recN |
mrsF2 | CTTGTGCCAATTCCCGGCTGAC | mrsK2 |
mrsR1 | GGATGGCCGGTGTCTCACATG | mrsK2 |
mrsF3 | CCATCGGTTTTCCCCATACCCATG | mrsK2R2 |
mrsR2 | GTGGGGGGAGTTTTATGGCGGAG | mrsK2R2 |
mrsF4 | GGTGAAGCCATCAGTGTCCGG | mrsR2 |
mrsR3 | CCAGCACCATTCGGTCCAAGAAAACC | mrsR2 |
mrsF5 | GTGGCTGTCTCAAACAGAACCGG | mrsG |
mrsR4 | GTTGCGGCTAATGGAAAACCCAGACC | mrsG |
mrsF6 | GGGCCTTTGTTAGGTGTATCCCTGG | mrsE |
mrsR5 | GGAAGACTCCCGCTTATGCCTAAC | mrsE |
mrsF7 | CCAGTGAACATGAGGAGCCC | mrsE-fbabB |
mrsR6 | CGCGATGACAAAAGAAGTCGCCG | mrsE-fbabB |
sboA1 | CTTCATTTGTTCCGCAATGTTCA | sboA |
sboA2 | CCCAGTGGGCCAATTGAATCCTCCC | sboA |
ablB1 | CGCGCAAGTAGTCGATTTCTAACA | albA |
ablB2 | CAAGTTTGGGCAAAAGAGCTTTTTC | albA |