From: Functional genomics of lactic acid bacteria: from food to health
Bacterial species | Example of Sequenced Strain | Isolation Source | Genome Size (Mbp) | Number of Plasmids | %GC | Number of Proteins | References |
---|---|---|---|---|---|---|---|
Lactobacilli | Â | Â | Â | Â | Â | Â | Â |
Lactobacillus acidophilus | NCFM | GI tract (Feces) | 1.99 | 0 | 34.7 | 1,832 | [112] |
Lactobacillus amylovorus | GRL1112 | Pig GI Tract (Feces)* | 2.13 | 2 | 38.1 | 2,121 | [195] |
Lactobacillus brevis | ATCC 367 | Unknown | 2.34 | 2 | 46.0 | 2,218 | [19] |
Lactobacillus buchneri | ATCC 11577 | Oral Cavity | 2.86 | n.d. | 39,5 | 3,002 | DS |
Lactobacillus casei | BL23 | Food (Cheese) | 3.08 | 0 | 46.3 | 2,997 | [196] |
Lactobacillus crispatus | EM-LC1 | GI Tract (Feces) | 1.83 | n.d. | 37.0 | 1,751 | DS |
Lactobacillus delbrueckii subsp. bulgaricus | ATCC 11842 | Food (Dairy product) | 1.87 | 0 | 49.7 | 1,529 | [19] |
Lactobacillus fermentum | IFO 3956 | Food (Plant) | 2.1 | 0 | 51.5 | 1,843 | [197] |
Lactobacillus gasseri | ATCC 33323 | Human origin | 1.89 | 0 | 35.3 | 1,755 | [19] |
Lactobacillus helveticus | DPC 4571 | Food (Cheese) | 2.08 | 0 | 37.1 | 1,610 | [113] |
Lactobacillus iners | AB-1 | Vaginal Cavity | 1.29 | 0 | 32.7 | 1,209 | [154] |
Lactobacillus jensenii | 269-3 | Vaginal Cavity | 1.69 | n.d. | 34.4 | 1,575 | DS |
Lactobacillus johnsonii | NCC 533 | GI Tract (Intestine) | 1.99 | 0 | 34.6 | 1,821 | [198] |
Lactobacillus kefiranofaciens subsp. kefiranofaciens | ZW3 | Food (Kefir) | 2.35 | 2 | 37.4 | 2,162 | [199] |
Lactobacillus paracasei subsp. casei | N1115 | Food (Dairy products) | 3.06 | 4 | 46.5 | 2,985 | [200] |
Lactobacillus plantarum | WCFS1 | Oral Cavity (Saliva) | 3.35 | 3 | 44.4 | 3,063 | [201] |
Lactobacillus reuteri | DSM 20016 | GI Tract (Intestine) | 2.0 | 0 | 38.9 | 1,900 | DS |
Lactobacillus rhamnosus | GG | GI Tract (Intestine) | 3.01 | 0 | 46.7 | 2,913 | [69] |
Lactobacillus ruminis | ATCC 25644 | GI Tract (Intestine) | 2.07 | 0 | 43.7 | 2,153 | [111] |
Lactobacillus salivarius subsp. salivarius | UCC118 | GI Tract (Intestine) | 2.13 | 3 | 33.0 | 2,013 | [106] |
Lactobacillus sakei subsp. sakei | 23K | Food (Meat) | 1.88 | 0 | 41.3 | 1,871 | [202] |
Lactococci | Â | Â | Â | Â | Â | Â | Â |
Lactococcus lactis subsp. lactis | IL1403 | Food (Cheese) | 2.37 | 0 | 35.3 | 2,277 | [13] |
Lactococcus lactis subsp. cremoris | MG1363 | Food (Dairy Products) | 2.53 | 0 | 35.7 | 2.434 | [203] |
Streptococci | Â | Â | Â | Â | Â | Â | Â |
Streptococcus salivarius | CCHSS3 | Oral Cavity | 2.22 | 0 | 39.9 | 2,027 | DS |
Streptococcus thermophilus | CNRZ1066 | Food (Yoghurt) | 1.8 | 0 | 39.1 | 1,914 | [181] |
Enterococci | Â | Â | Â | Â | Â | Â | Â |
Enterococcus faecalis | V583 | Clinical Sample (Blood) | 3.36 | 3 | 37.4 | 3,264 | [204] |
Enterococcus faecium | DO | Clinical Sample | 3.05 | 3 | 37.9 | 3,114 | [205] |
Oenococci | Â | Â | Â | Â | Â | Â | Â |
Oenococcus oeni | PSU-1 | Food (Plant) | 1.78 | 0 | 37.9 | 1,691 | [19] |
Pediococcus | Â | Â | Â | Â | Â | Â | Â |
Pediococcus pentosaceus | ATCC 25745 | Food (Plant) | 1.83 | 0 | 37.4 | 1,752 | [19] |
Pediococcus claussenii | ATCC BAA-344 | Food (Beer) | 1.98 | 8 | 37.0 | 1,881 | [182] |
Leuconostoc | Â | Â | Â | Â | Â | Â | Â |
Leuconostoc mesenteroides | ATCC 8293 | Food (Olives) | 2.08 | 1 | 37.7 | 2,003 | [19] |
Leuconostoc citreum | KM20 | Food (Kimchi) | 1.9 | 4 | 38.9 | 1,820 | [136] |
Leuconostoc gelidum | JB7 | Food (Kimchi) | 1.89 | 0 | 36.7 | 1,796 | [206] |
Leuconostoc carnosum | JB16 | Food (Kimchi) | 1.77 | 4 | 37.1 | 1,691 | [207] |
Leuconostoc kimchi | IMSNU 11154 | Food (Kimchi) | 2.1 | 5 | 37.9 | 2,129 | [208] |
Leuconostoc gasicomitatum | LMG 18811T | Food (Spoilage) | 1.95 | 0 | 36.7 | 1,912 | [209] |