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Table 3 The vanillin response genes and the genes significantly regulated by Yrr1p with vanillin stress

From: Unravel the regulatory mechanism of Yrr1p phosphorylation in response to vanillin stress in Saccharomyces cerevisiae

Function

BY4741(yrr1Δ + YRR1T185A)

vs

BY4741(yrr1Δ + YRR1WT)

BY4741(yrr1Δ + YRR1T185E)

vs

BY4741(yrr1Δ + YRR1WT)

BY4741(yrr1Δ + YRR1T185E)

vs

BY4741(yrr1Δ + YRR1T185A)

Ribosome biogenesis and rRNA processing

DBP2, NSR1

ARPS16A, RPL34A, RPP1A, RPL1A, RPL4A, RPS19A, RPL19A, RPL38, RPS10B, RPL4B, RPL36B, RPL31A, RLP24, RPL40B, RPL33A, RPL19B, DRS1, RPL32, TSR1, RPS18B, RPL27B, RPL23A, RPL12B, DBP9, RPS22B, RPL20B, RPL13A, RPS10A, RPL7A, RPL22A, RPA34, RPL11A, RPL24A, RPL37A, RPL26B, RPL16A, RPL13B, RPS24B, RPS11A, DBP3, RPS9B, RPS11B, NMD3, RPA12, RPL17B, DBP8, RPS16B, RPS1A, RPL16B, RPL20A, RPL31B, RPL11B, RPL15A, PRP43, RPL6B, RPS8B, RPS17B, MTR4, RPL1B, RPL2A, RPS31, RPA190, RPL8B, NOG1, RPL21A, RPL9A, RPA49, RPS0B, RPA43, RPA135, RPS26B, RPS0A, HAS1, NSR1, DBP2

MAK1, RPS26B, BRX1, DBP2

Dehydrogenase

None

GND2, AAD4, DSF1, BDH1, IDP2, ALD3, ARA1, SHH4, SHH4, GRE3, GCY1, SDH3, ETR1, BDH2, MDH1, HFD1, MDH2, SDH1, SDH8, SDH5, UGA2

AAD6, HOM2, HIS4, MIS1, IMD4, DLD3, ADH7, LYS9, LYS12, ALD5

GND2, AAD4, IDP2, BDH1, DSF1, ARA1, ALD3

ATP-binding cassette (ABC) transporter

None

SNQ2, YOR1, PDR15

NEW1, PDR5

SNQ2, YOR1

  1. Genes that are underlined are down-regulated; the others are up-regulated
  2. The genes listed in the table are those for which log2 > 1, p-value < 0.05