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Table 1 Assembly metrics for eight Komagataella strains assembled using PacBio whole-genome sequencing reads before removal of mitochondrial sequences

From: Genotypic and phenotypic diversity among Komagataella species reveals a hidden pathway for xylose utilization

 

Total assembly size (Mbp)

Number of contigs

N50 size (Mbp)

N50 number

Longest sequence (Mbp)

Sum of four largest sequences (Mbp)

K. mondaviorum CBS 15017

9.5

13

2.38

2

3.15

8.5

K. ulmi CBS 12361

9.6

11

2.74

2

3.30

9.5

K. populi CBS 12362

9.3

11

2.61

2

2.80

8.4

K. kurtzmanii CBS 12817

9.6

19

1.67

3

2.42

7.5

K. phaffii UWOPS 03-328y3

9.5

8

2.27

2

2.90

8.6

K. pastoris DSMZ 70877

9.6

8

2.72

2

3.32

9.5

K. pastoris CBS 9178

10.1

34

2.69

2

3.32

9.4

K. pseudopastoris CBS 9187

10.6

73

1.67

3

2.80

7.9

Ref. K. pastoris CBS 704

9.6

11

2.69

2

3.33

9.4

Ref. K. phaffii CBS 7435

9.4

7

2.40

2

2.89

9.4

  1. For comparison, the two existing reference assemblies of K. pastoris (ASM170810v1) and K. phaffii (ASM170808v1) were added (indicated by “Ref.”)
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