Table 2 Differential genes identified by transcriptome analysis
Gene name | Gene description | Type | Regulate | FC(ΔlttR/WT) |
|---|---|---|---|---|
LP_RS14610 | IS1182 family transposase | mRNA | Up | 100.747 |
LP_RS14775 | SLC45 family MFS transporter | mRNA | Up | 2.198 |
LP_RS15415 | DUF916 and DUF3324 domain-containing protein | mRNA | Up | 1.935 |
LP_RS01010 | DUF871 domain-containing protein | mRNA | Up | 1.931 |
LP_RS11220 | GntR family transcriptional regulator | mRNA | Up | 1.702 |
LP_RS12660 | Glycoside hydrolase family 1 protein | mRNA | Up | 1.7 |
LP_RS01000 | PTS sugar transporter subunit IIC | mRNA | Up | 1.696 |
LP_RS13760 | Hemolysin III family protein | mRNA | Up | 1.613 |
treR | Trehalose operon repressor | mRNA | Up | 1.611 |
LP_RS01020 | DgaE family pyridoxal phosphate-dependent ammonia lyase | mRNA | Up | 1.572 |
LP_RS02110 | Serine transporter | mRNA | Up | 1.57 |
spx | Transcriptional regulator Spx | mRNA | Up | 1.541 |
LP_RS10520 | Hypothetical protein | mRNA | Up | 1.535 |
LP_RS14565 | Galactose mutarotase | mRNA | Up | 1.532 |
LP_RS05750 | Aspartate-semialdehyde dehydrogenase | mRNA | Up | 1.52 |
LP_RS06040 | Hypothetical protein | mRNA | Up | 1.512 |
LP_RS15420 | WxL domain-containing protein | mRNA | Up | 1.512 |
LP_RS11200 | PTS sugar transporter subunit IIA | mRNA | Up | 1.506 |
LP_RS12525 | DUF916 and DUF3324 domain-containing protein | mRNA | Up | 1.503 |
LP_RS05765 | NADH-dependent flavin oxidoreductase | mRNA | Up | 1.503 |
LP_RS00610 | Helix-turn-helix transcriptional regulator | mRNA | Up | 1.5 |
LP_RS05365 | Peptide ABC transporter substrate-binding protein | mRNA | Down | 0.668 |
LP_RS12020 | LysM peptidoglycan-binding domain-containing protein | mRNA | Down | 0.668 |
LP_RS13890 | HIT family protein | mRNA | Down | 0.663 |
LP_RS01675 | AraC family transcriptional regulator | mRNA | Down | 0.659 |
LP_RS00140 | Hypothetical protein | mRNA | Down | 0.656 |
LP_RS00290 | ASCH domain-containing protein | mRNA | Down | 0.655 |
LP_RS06330 | Response regulator transcription factor | mRNA | Down | 0.654 |
LP_RS13055 | ABC transporter ATP-binding protein | mRNA | Down | 0.646 |
LP_RS06150 | DUF916 and DUF3324 domain-containing protein | mRNA | Down | 0.643 |
LP_RS06145 | LPXTG cell wall anchor domain-containing protein | mRNA | Down | 0.643 |
LP_RS05380 | ABC transporter ATP-binding protein | mRNA | Down | 0.642 |
mvk | Mevalonate kinase | mRNA | Down | 0.642 |
LP_RS07140 | ACP S-malonyltransferase | mRNA | Down | 0.637 |
LP_RS07130 | Ketoacyl-ACP synthase III | mRNA | Down | 0.636 |
LP_RS05375 | ABC transporter permease | mRNA | Down | 0.633 |
LP_RS11365 | LysR family transcriptional regulator | mRNA | Down | 0.629 |
LP_RS07625 | GIY-YIG nuclease family protein | mRNA | Down | 0.625 |
fabZ | 3-hydroxyacyl-ACP dehydratase FabZ | mRNA | Down | 0.623 |
LP_RS05800 | Membrane protein | mRNA | Down | 0.619 |
LP_RS12295 | Helix-turn-helix transcriptional regulator | mRNA | Down | 0.615 |
LP_RS04070 | MucBP domain-containing protein | mRNA | Down | 0.611 |
LP_RS04675 | AraC family transcriptional regulator | mRNA | Down | 0.609 |
LP_RS08765 | Hypothetical protein | mRNA | Down | 0.609 |
LP_RS13480 | Transporter substrate-binding domain-containing protein | mRNA | Down | 0.606 |
LP_RS14300 | C40 family peptidase | mRNA | Down | 0.603 |
LP_RS07570 | Ribonuclease HI family protein | mRNA | Down | 0.601 |
LP_RS12415 | Zinc ribbon domain-containing protein | mRNA | Down | 0.597 |
LP_RS12410 | Zinc-ribbon domain-containing protein | mRNA | Down | 0.59 |
LP_RS11005 | Viroplasmin family protein | mRNA | Down | 0.589 |
LP_RS11130 | Hypothetical protein | mRNA | Down | 0.583 |
LP_RS11350 | Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | mRNA | Down | 0.576 |
LP_RS12030 | Methylated-DNA–[protein]-cysteine S-methyltransferase | mRNA | Down | 0.571 |
LP_RS15375 | 2-keto-4-pentenoate hydratase | mRNA | Down | 0.558 |
LP_RS02570 | AEC family transporter | mRNA | Down | 0.544 |
LP_RS08575 | ISL3 family transposase | mRNA | Down | 0.532 |
LP_RS13185 | YxeA family protein | mRNA | Down | 0.528 |
LP_RS13235 | Ldh family oxidoreductase | mRNA | Down | 0.524 |
LP_RS12675 | LysM peptidoglycan-binding domain-containing protein | mRNA | Down | 0.521 |
LP_RS08270 | GNAT family N-acetyltransferase | mRNA | Down | 0.511 |
LP_RS00810 | Peptide ABC transporter substrate-binding protein | mRNA | Down | 0.51 |
LP_RS13245 | SH3 domain-containing protein | mRNA | Down | 0.47 |
LP_RS13240 | Cell wall hydrolase/muramidase | mRNA | Down | 0.46 |
LP_RS11700 | MFS transporter | mRNA | Down | 0.443 |
LP_RS07440 | ABC transporter permease | mRNA | Down | 0.44 |
LP_RS12305 | APC family permease | mRNA | Down | 0.436 |
LP_RS01255 | LysM peptidoglycan-binding domain-containing protein | mRNA | Down | 0.423 |
LP_RS00230 | LysR family transcriptional regulator | mRNA | Down | 0.291 |
LP_RS15475 | Replication protein | mRNA | Down | 0 |
LP_RS15480 | Hypothetical protein | mRNA | Down | 0 |