Skip to main content

Table 1 The assembly level of some bio-mining microbial strains

From: Recent progress in the application of omics technologies in the study of bio-mining microorganisms from extreme environments

Organism name

Strains with different assembly levels

Complete genome

Scaffold

Contig

A. ferrooxidans

YNTRS-40, ATCC 23270, ATCC 53993

YQH-1 [9]

CCM 4253, DSM 16786 [10], Hel18, PQ506 [10], PQ505 [10], CF3 [10], F221, BY0502, RVS1, DLC-5 [11], COP1 [10], S10 [10], BY-3

A. thiooxidans

ATCC 19377

CLST

VAN18-5, BN09-1, BC51, DXS-W, ATCC 21835 [10], GD1-3 [12], ATCC 8085 [10], ZBY, DMC [12], A02 [12], Licanantay [13], JYC-17 [12], ATCC 15494 [10], BY-02 [12], A01 [14]

A. caldus

MTH-04,

ATCC 51756 [15], SM-1 [16]

 

KU [10], CV18-1 [10], 6 [10], MELC5 [10], BC13 [10], VAN18-3 [10], DX [17], ZBY [17], ZJ [17], MNG [10], C-SH12 [10], F [10], S1 [17]

L. ferrooxidans

C2-3 [18]

  

L. ferriphilum

ML-04 [19], YSK [20]

UBA6657 [21], UBA5695 [21], UBA6673 [21], UBA6674 [21], UBA7872 [21], UBA7391 [21], UBA7384 [21], UBA7870 [21], UBA7392 [21], UBA6677 [21]

DSM 14647 [22], pb_238, DX [23], Sp-Cl [24], ZJ [23], UBA6676 [21], UBA4571 [21], SpSt-902 [25]

S. thermosulfidooxidans

 

CBAR-13, AMDSBA5 [26], DSM 9293, ST, Cutipay [26]

ZJ [27], ZBY [27], DX [27]

S. thermotolerans

Kr1 [28]

 Â