Table 2 The differentially expressed genes related to the biosynthesis of dTDP-l-rhamnose and β-hydroxy fatty acids, and the rhamnosyl transfer process
Gene id | Gene name | Readcount-GlyAn | Readcount-GluAn | log2(foldchange) | p-value | Gene description |
|---|---|---|---|---|---|---|
PA5322 | algC | 3951.9 | 3245.6 | 0.28 | 0.43 | phosphomannomutase AlgC |
PA5161 | rmlB | 4139.6 | 1464.7 | 1.49 | 9.58E−09 | dTDP-d-glucose 4,6-dehydratase |
PA5162 | rmlD | 1650.9 | 538.10 | 1.62 | 1.02E−09 | dTDP-4-dehydrorhamnose reductase |
PA5163 | rmlA | 2270.2 | 789.6 | 1.52 | 8.69E−09 | glucose-1-phosphate thymidylyltransferase |
PA5164 | rmlC | 2170.5 | 649.9 | 1.74 | 3.76E−11 | dTDP-4-dehydrorhamnose 3,5-epimerase |
PA1609 | fabB | 2195.5 | 1304.6 | 0.75 | 1.65E−03 | beta-ketoacyl-ACP synthase I |
PA1610 | fabA | 945.2 | 472.6 | 1.00 | 3.96E−05 | beta-hydroxydecanoyl-ACP dehydrase |
PA2965 | fabF1 | 1117.3 | 966.8 | 0.21 | 0.40 | beta-ketoacyl-acyl carrier protein synthase II |
PA1373 | fabF2 | 109.6 | 395.1 | − 1.85 | 2.57E−12 | 3-oxoacyl-acyl carrier protein synthase II |
PA2968 | fabD | 702.6 | 439.7 | 0.68 | 6.68E−03 | malonyl-CoA-[acyl-carrier-protein] transacylase |
PA2967 | fabG | 2143.7 | 926.5 | 1.21 | 5.82E−07 | 3-oxoacyl-[acyl-carrier-protein] reductase |
PA3333 | fabH2 | 677.1 | 10.0 | 6.08 | 2.65E−70 | 3-oxoacyl-[acyl-carrier-protein] synthase III |
PA3476 | rhlI | 5429.4 | 92.4 | 5.88 | 1.56E−87 | autoinducer synthesis protein RhlI |
PA3477 | rhlR | 13664.1 | 732.3 | 4.22 | 1.93E−56 | transcriptional regulator RhlR |
PA3478 | rhlB | 26462.6 | 243.7 | 6.76 | 1.28E−91 | rhamnosyltransferase chain B |
PA3479 | rhlA | 42259.3 | 370.3 | 6.83 | 1.27E−69 | rhamnosyltransferase chain A |
PA1130 | rhlC | 1418.9 | 16.1 | 6.46 | 2.61E−86 | rhamnosyltransferase 2 |
PA1432 | lasI | 1260. 4 | 196.1 | 2.68 | 1.95E−23 | autoinducer synthesis protein LasI |