TY - STD TI - Zimmerman FK, Entian KD. Yeast sugar metabolism: Biochemistry, Genetics, Biotechnology and Applications. (Technomic Publishing Company Inc, 1997). ID - ref1 ER - TY - JOUR AU - Christen, S. AU - Sauer, U. PY - 2011 DA - 2011// TI - Intracellular characterization of aerobic glucose metabolism in seven yeast species by 13C flux analysis and metabolomics JO - FEMS Yeast Res VL - 11 UR - https://doi.org/10.1111/j.1567-1364.2010.00713.x DO - 10.1111/j.1567-1364.2010.00713.x ID - Christen2011 ER - TY - JOUR AU - Kapoore, R. V. AU - Vaidyanathan, S. PY - 2016 DA - 2016// TI - Towards quantitative mass spectrometry-based metabolomics in microbial and mammalian systems JO - Philos Trans R Soc A-Math Phys Eng Sci. UR - https://doi.org/10.1098/rsta.2015.0363 DO - 10.1098/rsta.2015.0363 ID - Kapoore2016 ER - TY - JOUR AU - Becker, J. AU - Wittmann, C. PY - 2018 DA - 2018// TI - From systems biology to metabolically engineered cells-an omics perspective on the development of industrial microbes JO - Curr Opin Microbiol VL - 45 UR - https://doi.org/10.1016/j.mib.2018.06.001 DO - 10.1016/j.mib.2018.06.001 ID - Becker2018 ER - TY - JOUR AU - Bordbar, A. PY - 2017 DA - 2017// TI - Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics JO - Scientific Rep VL - 7 UR - https://doi.org/10.1038/srep46249 DO - 10.1038/srep46249 ID - Bordbar2017 ER - TY - JOUR AU - Dikicioglu, D. AU - Pir, P. AU - Oliver, S. G. PY - 2013 DA - 2013// TI - Predicting complex phenotype-genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory JO - Biotechnol J VL - 8 UR - https://doi.org/10.1002/biot.201300138 DO - 10.1002/biot.201300138 ID - Dikicioglu2013 ER - TY - JOUR AU - Bennett, B. D. PY - 2009 DA - 2009// TI - Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli JO - Nat Chem Biol VL - 5 UR - https://doi.org/10.1038/nchembio.186 DO - 10.1038/nchembio.186 ID - Bennett2009 ER - TY - JOUR AU - Smallbone, K. PY - 2013 DA - 2013// TI - A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes JO - FEBS Lett VL - 587 UR - https://doi.org/10.1016/j.febslet.2013.06.043 DO - 10.1016/j.febslet.2013.06.043 ID - Smallbone2013 ER - TY - JOUR AU - Ruijter, J. C. AU - Koskela, E. V. AU - Nandania, J. AU - Frey, A. D. AU - Velagapudi, V. PY - 2018 DA - 2018// TI - Understanding the metabolic burden of recombinant antibody production in Saccharomyces cerevisiae using a quantitative metabolomics approach JO - Yeast VL - 35 UR - https://doi.org/10.1002/yea.3298 DO - 10.1002/yea.3298 ID - Ruijter2018 ER - TY - JOUR AU - Martinez, V. S. AU - Kromer, J. O. PY - 2016 DA - 2016// TI - Quantification of microbial phenotypes JO - Metabolites VL - 6 UR - https://doi.org/10.3390/metabo6040045 DO - 10.3390/metabo6040045 ID - Martinez2016 ER - TY - JOUR AU - Nielsen, J. AU - Keasling, J. D. PY - 2016 DA - 2016// TI - Engineering cellular metabolism JO - Cell VL - 164 UR - https://doi.org/10.1016/j.cell.2016.02.004 DO - 10.1016/j.cell.2016.02.004 ID - Nielsen2016 ER - TY - JOUR AU - Guo, A. C. PY - 2013 DA - 2013// TI - ECMDB: The E-coli Metabolome Database JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks992 DO - 10.1093/nar/gks992 ID - Guo2013 ER - TY - JOUR AU - Jewison, T. PY - 2012 DA - 2012// TI - YMDB: the yeast metabolome database JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr916 DO - 10.1093/nar/gkr916 ID - Jewison2012 ER - TY - JOUR AU - Wishart, D. S. PY - 2007 DA - 2007// TI - HMDB: the human metabolome database JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl923 DO - 10.1093/nar/gkl923 ID - Wishart2007 ER - TY - JOUR AU - Sansone, S. A. PY - 2007 DA - 2007// TI - The metabolomics standards initiative JO - Nat Biotechnol VL - 25 UR - https://doi.org/10.1038/nbt0807-846b DO - 10.1038/nbt0807-846b ID - Sansone2007 ER - TY - JOUR AU - Edison, A. S. PY - 2016 DA - 2016// TI - The time is right to focus on model organism metabolomes JO - Metabolites UR - https://doi.org/10.3390/metabo6010008 DO - 10.3390/metabo6010008 ID - Edison2016 ER - TY - JOUR AU - Kvitvang, H. F. N. AU - Kristiansen, K. A. AU - Bruheim, P. PY - 2014 DA - 2014// TI - Assessment of capillary anion exchange ion chromatography tandem mass spectrometry for the quantitative profiling of the phosphometabolome and organic acids in biological extracts JO - J Chromatogr A VL - 1370 UR - https://doi.org/10.1016/j.chroma.2014.10.029 DO - 10.1016/j.chroma.2014.10.029 ID - Kvitvang2014 ER - TY - JOUR AU - Røst, L. M. AU - Shafaei, A. AU - Fuchino, K. AU - Bruheim, P. PY - 2020 DA - 2020// TI - Zwitterionic HILIC tandem mass spectrometry with isotope dilution for rapid, sensitive and robust quantification of pyridine nucleotides in biological extracts JO - J Chromatography B-Analy Technol Biomed Life Sci UR - https://doi.org/10.1016/j.jchromb.2020.122078 DO - 10.1016/j.jchromb.2020.122078 ID - Røst2020 ER - TY - JOUR AU - Stafsnes, M. H. AU - Rost, L. M. AU - Bruheim, P. PY - 2018 DA - 2018// TI - Improved phosphometabolome profiling applying isotope dilution strategy and capillary ion chromatography-tandem mass spectrometry JO - J Chromatography B-Analy Technol Biomed Life Sci VL - 1083 UR - https://doi.org/10.1016/j.jchromb.2018.02.004 DO - 10.1016/j.jchromb.2018.02.004 ID - Stafsnes2018 ER - TY - JOUR AU - Fuchino, K. AU - Kalnenieks, U. AU - Rutkis, R. AU - Grube, M. AU - Bruheim, P. PY - 2020 DA - 2020// TI - Metabolic profiling of glucose-fed metabolically active resting Zymomonas mobilis strains JO - Metabolites UR - https://doi.org/10.3390/metabo10030081 DO - 10.3390/metabo10030081 ID - Fuchino2020 ER - TY - JOUR AU - Lien, S. K. PY - 2013 DA - 2013// TI - Investigating alginate production and carbon utilization in Pseudomonas fluorescens SBW25 using mass spectrometry-based metabolic profiling JO - Metabolomics VL - 9 UR - https://doi.org/10.1007/s11306-012-0454-0 DO - 10.1007/s11306-012-0454-0 ID - Lien2013 ER - TY - JOUR AU - Pisithkul, T. AU - Patel, N. M. AU - Amador-Noguez, D. PY - 2015 DA - 2015// TI - Post-translational modifications as key regulators of bacterial metabolic fluxes JO - Curr Opin Microbiol VL - 24 UR - https://doi.org/10.1016/j.mib.2014.12.006 DO - 10.1016/j.mib.2014.12.006 ID - Pisithkul2015 ER - TY - JOUR AU - Røst, L. M. PY - 2020 DA - 2020// TI - Absolute quantification of the central carbon metabolome in eight commonly applied prokaryotic and eukaryotic model systems JO - Metabolites UR - https://doi.org/10.3390/metabo10020074 DO - 10.3390/metabo10020074 ID - Røst2020 ER - TY - JOUR AU - Schaechter, M. AU - Maaloe, O. AU - Kjeldgaard, N. O. PY - 1958 DA - 1958// TI - Dependency on medium and temperature of cell size and chemical composition during balances growth of Salmonella typhimurium JO - J Gen Microbiol VL - 19 UR - https://doi.org/10.1099/00221287-19-3-592 DO - 10.1099/00221287-19-3-592 ID - Schaechter1958 ER - TY - JOUR AU - Dijken, J. P. PY - 2000 DA - 2000// TI - An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains JO - Enzyme Microb Technol VL - 26 UR - https://doi.org/10.1016/s0141-0229(00)00162-9 DO - 10.1016/s0141-0229(00)00162-9 ID - Dijken2000 ER - TY - JOUR AU - Nijkamp, J. F. PY - 2012 DA - 2012// TI - De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113–7D, a model for modern industrial biotechnology JO - Microb. Cell Fact. UR - https://doi.org/10.1186/1475-2859-11-36 DO - 10.1186/1475-2859-11-36 ID - Nijkamp2012 ER - TY - JOUR AU - Boer, V. M. AU - Crutchfield, C. A. AU - Bradley, P. H. AU - Botstein, D. AU - Rabinowitz, J. D. PY - 2010 DA - 2010// TI - Growth-limiting Intracellular Metabolites in Yeast Growing under Diverse Nutrient Limitations JO - Mol Biol Cell VL - 21 UR - https://doi.org/10.1091/mbc.E09-07-0597 DO - 10.1091/mbc.E09-07-0597 ID - Boer2010 ER - TY - JOUR AU - Nishino, S. AU - Okahashi, N. AU - Matsuda, F. AU - Shimizu, H. PY - 2015 DA - 2015// TI - Absolute quantitation of glycolytic intermediates reveals thermodynamic shifts in Saccharomyces cerevisiae strains lacking PFK1 or ZWF1 genes JO - J Biosci Bioeng VL - 120 UR - https://doi.org/10.1016/j.jbiosc.2015.01.012 DO - 10.1016/j.jbiosc.2015.01.012 ID - Nishino2015 ER - TY - JOUR AU - Jung, Y. H. AU - Kim, S. AU - Yang, J. AU - Seo, J. H. AU - Kim, K. H. PY - 2017 DA - 2017// TI - Intracellular metabolite profiling of Saccharomyces cerevisiae evolved under furfural JO - Microb Biotechnol VL - 10 UR - https://doi.org/10.1111/1751-7915.12465 DO - 10.1111/1751-7915.12465 ID - Jung2017 ER - TY - JOUR AU - Huberts, D. AU - Niebel, B. AU - Heinemann, M. PY - 2012 DA - 2012// TI - A flux-sensing mechanism could regulate the switch between respiration and fermentation JO - FEMS Yeast Res VL - 12 UR - https://doi.org/10.1111/j.1567-1364.2011.00767.x DO - 10.1111/j.1567-1364.2011.00767.x ID - Huberts2012 ER - TY - JOUR AU - Verduyn, C. AU - Postma, E. AU - Scheffers, W. A. AU - Vandijken, J. P. PY - 1992 DA - 1992// TI - Effect of benzoic-acid on metabolic fluxes in yeasts - A continuous culture study on the regulation of respiration and alcoholic fermentation JO - Yeast VL - 8 UR - https://doi.org/10.1002/yea.320080703 DO - 10.1002/yea.320080703 ID - Verduyn1992 ER - TY - JOUR AU - Cerulus, B. PY - 2018 DA - 2018// TI - Transition between fermentation and respiration determines history-dependent behavior in fluctuating carbon sources JO - Elife UR - https://doi.org/10.7554/eLife.39234 DO - 10.7554/eLife.39234 ID - Cerulus2018 ER - TY - JOUR AU - Franco-Duarte, R. PY - 2016 DA - 2016// TI - New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking JO - Food Chem VL - 211 UR - https://doi.org/10.1016/j.foodchem.2016.05.080 DO - 10.1016/j.foodchem.2016.05.080 ID - Franco-Duarte2016 ER - TY - JOUR AU - Mendes, I. PY - 2017 DA - 2017// TI - Integrating transcriptomics and metabolomics for the analysis of the aroma profiles of Saccharomyces cerevisiae strains from diverse origins JO - BMC Genomics UR - https://doi.org/10.1186/s12864-017-3816-1 DO - 10.1186/s12864-017-3816-1 ID - Mendes2017 ER - TY - JOUR AU - Moktaduzzaman, M. PY - 2015 DA - 2015// TI - Galactose utilization sheds new light on sugar metabolism in the sequenced strain Dekkera bruxellensis CBS 2499 JO - FEMS Yeast Res UR - https://doi.org/10.1093/femsyr/fou009 DO - 10.1093/femsyr/fou009 ID - Moktaduzzaman2015 ER - TY - JOUR AU - Lis, A. V. PY - 2019 DA - 2019// TI - Exploring small-scale chemostats to scale up microbial processes: 3-hydroxypropionic acid production in S. cerevisiae JO - Microb. Cell. Fact. UR - https://doi.org/10.1186/s12934-019-1101-5 DO - 10.1186/s12934-019-1101-5 ID - Lis2019 ER - TY - JOUR AU - Daran-Lapujade, P. PY - 2004 DA - 2004// TI - Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae-a chemostat culture study JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M309578200 DO - 10.1074/jbc.M309578200 ID - Daran-Lapujade2004 ER - TY - JOUR AU - Chubukov, V. AU - Gerosa, L. AU - Kochanowski, K. AU - Sauer, U. PY - 2014 DA - 2014// TI - Coordination of microbial metabolism JO - Nat Rev Microbiol VL - 12 UR - https://doi.org/10.1038/nrmicro3238 DO - 10.1038/nrmicro3238 ID - Chubukov2014 ER - TY - JOUR AU - Huergo, L. F. AU - Dixon, R. PY - 2015 DA - 2015// TI - The Emergence of 2-Oxoglutarate as a Master Regulator Metabolite JO - Microbiol Mol Biol Rev VL - 79 UR - https://doi.org/10.1128/mmbr.00038-15 DO - 10.1128/mmbr.00038-15 ID - Huergo2015 ER - TY - JOUR AU - Kochanowski, K. PY - 2017 DA - 2017// TI - Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli JO - Mol Syst Biol UR - https://doi.org/10.15252/msb.20167402 DO - 10.15252/msb.20167402 ID - Kochanowski2017 ER - TY - JOUR AU - Litsios, A. AU - Ortega, A. D. AU - Witt, E. C. AU - Heinemann, M. PY - 2018 DA - 2018// TI - Metabolic-flux dependent regulation of microbial physiology JO - Curr Opin Microbiol VL - 42 UR - https://doi.org/10.1016/j.mib.2017.10.029 DO - 10.1016/j.mib.2017.10.029 ID - Litsios2018 ER - TY - JOUR AU - Atkinson, D. E. AU - Walton, G. M. PY - 1967 DA - 1967// TI - Adenosine triphosphate conservation in metabolic regulation-rat liver citrate cleavage enzyme JO - J Biol Chem VL - 242 UR - https://doi.org/10.1016/S0021-9258(18)95956-9 DO - 10.1016/S0021-9258(18)95956-9 ID - Atkinson1967 ER - TY - JOUR AU - Watson, T. G. PY - 1976 DA - 1976// TI - Amino-acid pool composition of saccharomyces-cerevisiae as a function of growth-rate and amino-acid nitrogen-source JO - J Gen Microbiol VL - 96 UR - https://doi.org/10.1099/00221287-96-2-263 DO - 10.1099/00221287-96-2-263 ID - Watson1976 ER - TY - JOUR AU - Hameri, T. AU - Fengos, G. AU - Ataman, M. AU - Miskovic, L. AU - Hatzimanikatis, V. PY - 2019 DA - 2019// TI - Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations JO - Metab Eng VL - 52 UR - https://doi.org/10.1016/j.ymben.2018.10.005 DO - 10.1016/j.ymben.2018.10.005 ID - Hameri2019 ER - TY - JOUR AU - Stafsnes, M. H. AU - Røst, L. M. AU - Bruheim, P. PY - 2018 DA - 2018// TI - Improved phosphometabolome profiling applying isotope dilution strategy and capillary ion chromatography-tandem mass spectrometry JO - J Chromatography B Analy Technol Biomed Life Sci VL - 1083 UR - https://doi.org/10.1016/j.jchromb.2018.02.004 DO - 10.1016/j.jchromb.2018.02.004 ID - Stafsnes2018 ER - TY - JOUR AU - Droste, P. AU - Miebach, S. AU - Niedenfuhr, S. AU - Wiechert, W. AU - Noh, K. PY - 2011 DA - 2011// TI - Visualizing multi-omics data in metabolic networks with the software Omix-A case study JO - Biosystems VL - 105 UR - https://doi.org/10.1016/j.biosystems.2011.04.003 DO - 10.1016/j.biosystems.2011.04.003 ID - Droste2011 ER -