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Table 1 Plasmids used in this study

From: The length of ribosomal binding site spacer sequence controls the production yield for intracellular and secreted proteins by Bacillus subtilis

Name

Description

Source

pBSMul1

E. coli–B. subtilis shuttle vector, PHpaII, secretion signal (SPlipA), ColE1 repB KmrAmpr

[22]

pET22-sfGFP1-10

pET22b(+) containing the truncated sfGFP1-10 gen under control of PT7

[31]

pEBP41

E. coli–B. subtilis–P. putida shuttle vector, PT7, Pxyl, Gmr, GFPmut3

[29]

pEBP41-NdeI

pEBP41 with deleted NdeI site within the GFPmut3 gene by QuikChange PCR® using the primers P1 and P2

This study

pBSMul1(SPBox)-SPxxx-cut-11

Signal peptide (SP) library based on pBSMul1 containing HindIII–XbaI inserts of the cutinase cut of F. solani pisi fused to a GFP11 tag and with different signal peptides (SPepr, SPpel, SPbsn)

[31]

pBSMul1(SPBox)-SPxxx-EXLX1-11

Signal peptide (SP) library based on pBSMul1 containing HindIII–XbaI inserts of the swollenin EXLX1 of B. subtilis fused to a GFP11 tag and with different signal peptides (SPepr, SPpel, SPbsn)

[31]

Standard expression plasmids (based on pBSMul1 with a 4 nucleotide spacer)

 pBS4nt-GFPmut3

pBSMul1 containing a 723 bp NdeI–XbaI GFPmut3 fragment amplified from pEBP41-NdeI with primers P3/P4

This study

 pBS4nt-GUS

pBSMul1 containing a 1828 bp NdeI–XbaI (uidA) fragment amplified from E. coli DH5α genome with primers P5/P6

This study

 pBS4nt-SPepr-cut-11

pBSMul1 containing an 845 bp NdeI–XbaI SPepr-cut-11 fragment amplified from SP library using primers P7/P10

This study

 pBS4nt-SPpel-cut-11

pBSMul1 containing an 827 bp NdeI–XbaI SPpel-cut-11 fragment amplified from SP library using primers P8/P10

This study

 pBS4nt-SPbsn-cut-11

pBSMul1 containing an 848 bp NdeI–XbaI SPbsn-cut-11 fragment amplified from SP library using primers P9/P10

This study

 pBS4nt-SPepr-EXLX1-11

pBSMul1 containing an 824 bp NdeI–XbaI SPEXLX1-cut-11 fragment amplified from SP library using primers P7/P10

This study

 pBS4nt-SPpel-EXLX1-11

pBSMul1 containing an 806 bp NdeI–XbaI SPpel-EXLX1-11 fragment amplified from SP library using primers P8/P10

This study

 pBS4nt-SPbsn-EXLX1-11

pBSMul1 containing an 827 bp NdeI–XbaI SPbsn-EXLX1-11 fragment amplified from SP library using primers P9/P10

This study

Expression plasmids with extended spacers

 pBSxnt-Y

Spacers ranging in length from 5 to 12 nucleotides (xnt) by insertion of adenosines for all above mentioned plasmids (Y: -GFPmut3, -GUS, -SPepr-cut-11, -SPpel-cut-11, -SPbsn-cut-11, -SPepr-EXLX1-11, -SPpel-EXLX1-11, -SPbsn-EXLX1-11)

This study

 pBSxnt-SPepr-cut-11_start1

pBSxnt-SPepr-cut-11 with the second putative translational start codon ATG exchanged by ACG

This study

 pBSxnt-SPepr-cut-11_start2

pBSxnt-SPepr-cut-11 with the first translational start codon ATG exchanged by ACG

This study

Spacer sequence library

 pBS7nt-4N-GFPmut3

Spacer library based on pBS7nt-GFPmut3 containing the 7nt long spacer sequence 5′-NNNNCAT-3′ inserted by QuikChange PCR® and primers P27/P28

This study

 pBS7nt-4N-SPpel-cut-11

Spacer library based on pBS7nt-SPpel-cut-11 containing the 7nt long spacer sequence 5′-NNNNCAT-3′ inserted by QuikChange PCR® and primers P29/P30

This study