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Table 1 List of plasmids used in caffeic acid production strains

From: Heterologous caffeic acid biosynthesis in Escherichia coli is affected by choice of tyrosine ammonia lyase and redox partners for bacterial Cytochrome P450

Plasmid name

Backbone

Enzyme encoded in MCSI

Enzyme encoded in MCSII

Source

IR54

pKVS45

PdR-Pux operon

n.a.

[18]

IR64

pCDFduet

/

6His-CYP199A2 F185L N∆7

[18]

c22

pRSFduet

6His-RgTAL

/

This study

c25

pCDFduet

/

PCNA3-CYP199A2 F185L N∆7

This study

c28

pETduet

6His-PCNA2-Pux

PCNA1-PdR (opt)

This study

c50

pETduet

6His-Pux

PdR (opt)

This study

c62

pETduet

6His-Pux

PuR

This study

c63

pETduet

6His-PCNA2-Pux

PCNA1-(GGGS)2-PuR

This study

c71

pRSFduet

6His-FjTAL

/

This study

c72

pRSFduet

6His-SeSam8

/

This study

c84

pCDFduet

6His-Pux

6His-CYP199A2F185L N∆7

This study

c86

pETduet

6His-Pdx

PdR (opt)

This study

c88

pETduet

6His-PCNA2-Pdx

PCNA1-(GGGS)2-PdR(opt)

This study

c96

pCDFduet

/

PCNA1-GGS-CYP199A2 F185L N∆7

This study

c97

pETduet

6His-PCNA2-Pux

PCNA3-(GGGS)2-PdR (opt)

This study

c98

pETduet

6His-PCNA2-Pux

PCNA3-(GGGS)2-PuR

This study

c106

pETduet

6His-PCNA2-Pdx

PCNA3-GGS-PdR (opt)

This study

c185

pRSFduet

6His-FjTAL

Pux

This study

Plasmid backbones

 Backbone

Antibiotic resistance

Copy number

Origin of replication

 pKVS45

carbenicillin

~ 10

p15A

 pCDFduet

spectinomycin

20–40

CloDF13

 pRSFduet

kanamycin

> 100

RSF1030

 pETduet

carbenicillin

~ 40

ColE1

  1. MCSI and II, multiple cloning site (each with its own T7 promoter and terminator); 6His, sequence encoding an N-terminal hexahistidine tag; Pdx, putidaredoxin from P. putida; PdR, putidaredoxin reductase from P. putida; Pux, palustrisredoxin from R. palustris; PuR, palustrisredoxin reductase from R. palustris; RgTAL, Tyrosine ammonia lyase from R. glutinis; FjTAL, Tyrosine ammonia lyase from F. johnsoniae; SeSam8, Tyrosine ammonia lyase from S. espanaensis; PCNA1-3, subunits of S. solfataricus DNA sliding clamp; GGS, sequence encoding glycine–glycine-serine linker; (GGGS)2, sequence encoding tandem repeat of glycine–glycine-glycine-serine linker; (opt), codon optimized for expression in E. coli