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Table 1 Number of genes affected by different SNPs and indels

From: Enhancement of cellulase production in Trichoderma reesei RUT-C30 by comparative genomic screening

Total SNPs 184 (77)b Total indels 40 (30)b
In promoters 60 (18) In promoters 8 (5)
In terminators 33 (22) In terminators 13 (11)
In introns 13 (5) In introns 5 (5)
In exons 41 (20) In exons 3 (1)
Synonymous 15 (4) Total intergenic hitsa 26
Nonsynonymous 26 (13) Number of genes affecteda 27
Total intergenic hitsa 131   
Number of genes affecteda 130   
  1. aThe difference in the sum is due to mutations affecting the same gene simultaneously at the two regions—promoter and terminator. Differences in genes affected are due to several single nucleotide exchanges occurring in the same gene
  2. bSNPs and indels that exist in SS-II, but not in NG14 and RUT-C30