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Table 1 Number of genes affected by different SNPs and indels

From: Enhancement of cellulase production in Trichoderma reesei RUT-C30 by comparative genomic screening

Total SNPs

184 (77)b

Total indels

40 (30)b

In promoters

60 (18)

In promoters

8 (5)

In terminators

33 (22)

In terminators

13 (11)

In introns

13 (5)

In introns

5 (5)

In exons

41 (20)

In exons

3 (1)

Synonymous

15 (4)

Total intergenic hitsa

26

Nonsynonymous

26 (13)

Number of genes affecteda

27

Total intergenic hitsa

131

  

Number of genes affecteda

130

  
  1. aThe difference in the sum is due to mutations affecting the same gene simultaneously at the two regions—promoter and terminator. Differences in genes affected are due to several single nucleotide exchanges occurring in the same gene
  2. bSNPs and indels that exist in SS-II, but not in NG14 and RUT-C30