TY - JOUR AU - Peter, J. AU - Chiara, M. D. AU - Friedrich, A. AU - Yue, J. X. AU - Pflieger, D. AU - Bergström, A. PY - 2018 DA - 2018// TI - Genome evolution across 1,011 Saccharomyces cerevisiae isolates JO - Nature VL - 556 UR - https://doi.org/10.1038/s41586-018-0030-5 DO - 10.1038/s41586-018-0030-5 ID - Peter2018 ER - TY - JOUR AU - Dujon, B. AU - Sherman, D. AU - Fischer, G. AU - Durrens, P. AU - Casaregola, S. AU - Lafontaine, I. PY - 2004 DA - 2004// TI - Genome evolution in yeasts JO - Nature VL - 430 UR - https://doi.org/10.1038/nature02579 DO - 10.1038/nature02579 ID - Dujon2004 ER - TY - JOUR AU - Dujon, B. PY - 2010 DA - 2010// TI - Yeast evolutionary genomics JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2811 DO - 10.1038/nrg2811 ID - Dujon2010 ER - TY - JOUR AU - Radke, D. W. AU - Lee, C. PY - 2015 DA - 2015// TI - Adaptive potential of genomic structural variation in human and mammalian evolution JO - Brief Funct Genom VL - 14 UR - https://doi.org/10.1093/bfgp/elv019 DO - 10.1093/bfgp/elv019 ID - Radke2015 ER - TY - JOUR AU - Shastry, B. S. PY - 2002 DA - 2002// TI - SNP alleles in human disease and evolution JO - J Hum Genet VL - 47 UR - https://doi.org/10.1007/s100380200086 DO - 10.1007/s100380200086 ID - Shastry2002 ER - TY - JOUR AU - Mills, R. E. PY - 2006 DA - 2006// TI - An initial map of insertion and deletion (INDEL) variation in the human genome JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4565806 DO - 10.1101/gr.4565806 ID - Mills2006 ER - TY - JOUR AU - Ellis, H. M. AU - Yu, D. AU - DiTizio, T. AU - Court, D. L. PY - 2001 DA - 2001// TI - High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides JO - P Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.121164898 DO - 10.1073/pnas.121164898 ID - Ellis2001 ER - TY - JOUR AU - Loo, B. V. AU - Spelberg, J. H. L. AU - Kingma, J. AU - Sonke, T. AU - Wubbolts, M. G. AU - Janssen, D. B. PY - 2004 DA - 2004// TI - Directed evolution of epoxide hydrolase from A. radiobacter toward higher enantioselectivity by error-prone PCR and DNA shuffling JO - Chem Biol VL - 11 UR - https://doi.org/10.1016/j.chembiol.2004.04.019 DO - 10.1016/j.chembiol.2004.04.019 ID - Loo2004 ER - TY - JOUR AU - Gaj, T. AU - Gersbach, C. A. AU - Barbas, C. R. PY - 2013 DA - 2013// TI - ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering JO - Trends Biotechnol VL - 31 UR - https://doi.org/10.1016/j.tibtech.2013.04.004 DO - 10.1016/j.tibtech.2013.04.004 ID - Gaj2013 ER - TY - JOUR AU - Li, W. AU - Teng, F. AU - Li, T. D. AU - Zhou, Q. PY - 2013 DA - 2013// TI - Simultaneous generation and germline transmission of multiple gene mutations in rat using CRISPR-Cas systems JO - Nat Biotechnol VL - 31 UR - https://doi.org/10.1038/nbt.2652 DO - 10.1038/nbt.2652 ID - Li2013 ER - TY - JOUR AU - Hsu, P. D. AU - Lander, E. S. AU - Zhang, F. PY - 2014 DA - 2014// TI - Development and applications of CRISPR-Cas9 for genome engineering JO - Cell VL - 157 UR - https://doi.org/10.1016/j.cell.2014.05.010 DO - 10.1016/j.cell.2014.05.010 ID - Hsu2014 ER - TY - JOUR AU - Wu, Y. AU - Li, B. Z. AU - Zhao, M. AU - Mitchell, L. A. AU - Xie, Z. X. AU - Lin, Q. H. PY - 2017 DA - 2017// TI - Bug mapping and fitness testing of chemically synthesized chromosome X JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf4706 DO - 10.1126/science.aaf4706 ID - Wu2017 ER - TY - JOUR AU - Xie, Z. X. AU - Li, B. Z. AU - Mitchell, L. A. AU - Wu, Y. AU - Qi, X. AU - Jin, Z. PY - 2017 DA - 2017// TI - “Perfect” designer chromosome V and behavior of a ring derivative JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf4704 DO - 10.1126/science.aaf4704 ID - Xie2017 ER - TY - JOUR AU - Mercy, G. AU - Mozziconacci, J. AU - Scolari, V. F. AU - Yang, K. AU - Zhao, G. AU - Thierry, A. PY - 2017 DA - 2017// TI - 3D organization of synthetic and scrambled chromosomes JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf4597 DO - 10.1126/science.aaf4597 ID - Mercy2017 ER - TY - JOUR AU - Shen, Y. AU - Wang, Y. AU - Chen, T. AU - Gao, F. AU - Gong, J. AU - Abramczyk, D. PY - 2017 DA - 2017// TI - Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf4791 DO - 10.1126/science.aaf4791 ID - Shen2017 ER - TY - JOUR AU - Mitchell, L. A. AU - Wang, A. AU - Stracquadanio, G. AU - Kuang, Z. AU - Wang, X. AU - Yang, K. PY - 2017 DA - 2017// TI - Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf4831 DO - 10.1126/science.aaf4831 ID - Mitchell2017 ER - TY - JOUR AU - Zhang, W. AU - Zhao, G. AU - Luo, Z. AU - Lin, Y. AU - Wang, L. AU - Guo, Y. PY - 2017 DA - 2017// TI - Engineering the ribosomal DNA in a megabase synthetic chromosome JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf3981 DO - 10.1126/science.aaf3981 ID - Zhang2017 ER - TY - JOUR AU - Richardson, S. M. AU - Mitchell, L. A. AU - Stracquadanio, G. AU - Yang, K. AU - Dymond, J. S. AU - DiCarlo, J. E. PY - 2017 DA - 2017// TI - Design of a synthetic yeast genome JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf4557 DO - 10.1126/science.aaf4557 ID - Richardson2017 ER - TY - JOUR AU - Shen, Y. AU - Stracquadanio, G. AU - Wang, Y. AU - Yang, K. AU - Mitchell, L. A. AU - Xue, Y. PY - 2016 DA - 2016// TI - SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes JO - Genome Res VL - 26 UR - https://doi.org/10.1101/gr.193433.115 DO - 10.1101/gr.193433.115 ID - Shen2016 ER - TY - JOUR AU - Wang, J. AU - Xie, Z. X. AU - Ma, Y. AU - Li, B. Z. AU - Yuan, Y. J. PY - 2018 DA - 2018// TI - Ring synthetic chromosome V SCRaMbLE JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-06216-y DO - 10.1038/s41467-018-06216-y ID - Wang2018 ER - TY - JOUR AU - Jia, B. AU - Wu, Y. AU - Li, B. Z. AU - Mitchell, L. A. AU - Liu, H. AU - Pan, S. PY - 2018 DA - 2018// TI - Precise control of SCRaMbLE in synthetic haploid and diploid yeast JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-03084-4 DO - 10.1038/s41467-018-03084-4 ID - Jia2018 ER - TY - JOUR AU - Shen, M. J. AU - Wu, Y. AU - Yang, K. AU - Li, Y. X. AU - Xu, H. AU - Zhang, H. R. PY - 2018 DA - 2018// TI - Heterozygous diploid and interspecies SCRaMbLEing JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-04157-0 DO - 10.1038/s41467-018-04157-0 ID - Shen2018 ER - TY - JOUR AU - Wu, Y. AU - Zhu, R. Y. AU - Mitchell, L. A. AU - Ma, L. AU - Liu, R. AU - Zhao, M. PY - 2018 DA - 2018// TI - In vitro DNA SCRaMbLE JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-03743-6 DO - 10.1038/s41467-018-03743-6 ID - Wu2018 ER - TY - JOUR AU - Liu, W. AU - Luo, Z. Q. AU - Wang, Y. AU - Pham, N. T. AU - Tuck, L. AU - Pérez-Pi, I. PY - 2018 DA - 2018// TI - Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-04254-0 DO - 10.1038/s41467-018-04254-0 ID - Liu2018 ER - TY - JOUR AU - Blount, B. A. AU - Gowers, G. F. AU - Ho, J. C. H. AU - Ledesma-Amaro, R. AU - Jovicevic, D. AU - McKiernan, R. M. PY - 2018 DA - 2018// TI - Rapid host strain improvement by in vivo rearrangement of a synthetic yeast chromosome JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-03143-w DO - 10.1038/s41467-018-03143-w ID - Blount2018 ER - TY - JOUR AU - Luo, Z. Q. AU - Wang, L. H. AU - Wang, Y. AU - Zhang, W. M. AU - Guo, Y. K. AU - Shen, Y. PY - 2018 DA - 2018// TI - Identifying and characterizing SCRaMbLEd synthetic yeast using ReSCuES JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-017-00806-y DO - 10.1038/s41467-017-00806-y ID - Luo2018 ER - TY - JOUR AU - Wang, J. AU - Jia, B. AU - Xie, Z. X. AU - Li, Y. X. AU - Yuan, Y. J. PY - 2018 DA - 2018// TI - Improving prodeoxyviolacein production via multiplex SCRaMbLE iterative cycles JO - Front Chem Sci Eng UR - https://doi.org/10.1007/s11705-018-1739-2 DO - 10.1007/s11705-018-1739-2 ID - Wang2018 ER - TY - JOUR AU - Lamb, T. M. AU - Xu, W. AU - Diamond, A. AU - Mitchell, A. P. PY - 2001 DA - 2001// TI - Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway JO - J Biol Chem VL - 276 UR - https://doi.org/10.1074/jbc.M008381200 DO - 10.1074/jbc.M008381200 ID - Lamb2001 ER - TY - JOUR AU - Serrano, R. AU - Martín, H. AU - Casamayor, A. AU - Ariño, J. PY - 2006 DA - 2006// TI - Signaling alkaline pH stress in the yeast Saccharomyces cerevisiae through the Wsc1 cell surface sensor and the Slt2 MAPK pathway JO - J Biol Chem VL - 281 UR - https://doi.org/10.1074/jbc.M604497200 DO - 10.1074/jbc.M604497200 ID - Serrano2006 ER - TY - JOUR AU - Romano, G. H. AU - Gurvich, Y. AU - Lavi, O. AU - Ulitsky, I. AU - Shamir, R. AU - Kupiec, M. PY - 2010 DA - 2010// TI - Different sets of QTLs influence fitness variation in yeast JO - Mol Syst Biol UR - https://doi.org/10.1038/msb.2010.1 DO - 10.1038/msb.2010.1 ID - Romano2010 ER - TY - JOUR AU - Storms, R. K. AU - Ni, L. AU - Herman, Z. AU - Davis, K. AU - Entian, K. AU - André, B. PY - 2002 DA - 2002// TI - Functional profiling of the Saccharomyces cerevisiae genome JO - Nature VL - 418 UR - https://doi.org/10.1038/nature00935 DO - 10.1038/nature00935 ID - Storms2002 ER - TY - JOUR AU - Serrano, R. AU - Bernal, D. AU - Simón, E. AU - Ariño, J. PY - 2004 DA - 2004// TI - Copper and iron are the limiting factors for growth of the yeast Saccharomyces cerevisiae in an alkaline environment JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M313746200 DO - 10.1074/jbc.M313746200 ID - Serrano2004 ER - TY - JOUR AU - Serrano, R. AU - Ruiz, A. AU - Bernal, D. AU - Chambers, J. R. AU - Ariño, J. PY - 2002 DA - 2002// TI - The transcriptional response to alkaline pH in Saccharomyces cerevisiae: evidence for calcium-mediated signalling JO - Mol Microbiol VL - 46 UR - https://doi.org/10.1046/j.1365-2958.2002.03246.x DO - 10.1046/j.1365-2958.2002.03246.x ID - Serrano2002 ER - TY - JOUR AU - Veis, J. AU - Klug, H. AU - Koranda, M. AU - Ammerer, G. PY - 2007 DA - 2007// TI - Activation of the G2/M-specific gene CLB2 requires multiple cell cycle signals JO - Mol Cell Biol VL - 27 UR - https://doi.org/10.1128/MCB.01253-07 DO - 10.1128/MCB.01253-07 ID - Veis2007 ER - TY - JOUR AU - Lindstrom, D. L. AU - Gottschling, D. E. PY - 2009 DA - 2009// TI - The mother enrichment program: a genetic system for facile replicative life span analysis in Saccharomyces cerevisiae JO - Genetics VL - 183 UR - https://doi.org/10.1534/genetics.109.106229 DO - 10.1534/genetics.109.106229 ID - Lindstrom2009 ER - TY - JOUR AU - Bean, D. W. AU - Matson, S. W. PY - 1997 DA - 1997// TI - Identification of the gene encoding scHelI, a DNA helicase from Saccharomyces cerevisiae JO - Yeast VL - 13 UR - https://doi.org/3.0.CO;2-U DO - 3.0.CO;2-U ID - Bean1997 ER - TY - JOUR AU - Biswas, E. E. AU - Chen, P. H. AU - Leszyk, J. AU - Biswas, S. B. PY - 1995 DA - 1995// TI - Biochemical and genetic characterization of a replication protein A-dependent DNA helicase from the yeast, Saccharomyces cerevisiae JO - Biochem Biophys Res Commun VL - 206 UR - https://doi.org/10.1006/bbrc.1995.1121 DO - 10.1006/bbrc.1995.1121 ID - Biswas1995 ER - TY - JOUR AU - Nourani, A. AU - Robert, F. AU - Winston, F. PY - 2006 DA - 2006// TI - Evidence that Spt2/Sin1, an HMG-like factor, plays roles in transcription elongation, chromatin structure, and genome stability in Saccharomyces cerevisiae JO - Mol Cell Biol VL - 26 UR - https://doi.org/10.1128/MCB.26.4.1496-1509.2006 DO - 10.1128/MCB.26.4.1496-1509.2006 ID - Nourani2006 ER - TY - JOUR AU - Thebault, P. AU - Boutin, G. AU - Bhat, W. AU - Rufiange, A. AU - Martens, J. AU - Nourani, A. PY - 2011 DA - 2011// TI - Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II JO - Mol Cell Biol VL - 31 UR - https://doi.org/10.1128/MCB.01083-10 DO - 10.1128/MCB.01083-10 ID - Thebault2011 ER - TY - JOUR AU - Bhat, W. AU - Boutin, G. AU - Rufiange, A. AU - Nourani, A. PY - 2013 DA - 2013// TI - Casein kinase 2 associates with the yeast chromatin reassembly factor Spt2/Sin1 to regulate its function in the repression of spurious transcription JO - Mol Cell Biol VL - 33 UR - https://doi.org/10.1128/MCB.00525-13 DO - 10.1128/MCB.00525-13 ID - Bhat2013 ER - TY - JOUR AU - Hershkovits, G. AU - Bangio, H. AU - Cohen, R. AU - Katcoff, D. J. PY - 2006 DA - 2006// TI - Recruitment of mRNA cleavage/polyadenylation machinery by the yeast chromatin protein Sin1p/Spt2p JO - P Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0602014103 DO - 10.1073/pnas.0602014103 ID - Hershkovits2006 ER - TY - JOUR AU - Hampsey, M. PY - 1997 DA - 1997// TI - A review of phenotypes in Saccharomyces cerevisiae JO - Yeast VL - 13 UR - https://doi.org/3.0.CO;2-7 DO - 3.0.CO;2-7 ID - Hampsey1997 ER -