TY - JOUR AU - Duncan, S. H. AU - Louis, P. AU - Flint, H. J. PY - 2004 DA - 2004// TI - Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product JO - Appl Environ Microbiol VL - 70 UR - https://doi.org/10.1128/AEM.70.10.5810-5817.2004 DO - 10.1128/AEM.70.10.5810-5817.2004 ID - Duncan2004 ER - TY - JOUR AU - Belenguer, A. AU - Duncan, S. H. AU - Calder, A. G. AU - Holtrop, G. AU - Louis, P. AU - Lobley, G. E. AU - Flint, H. J. PY - 2006 DA - 2006// TI - Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.72.5.3593-3599.2006 DO - 10.1128/AEM.72.5.3593-3599.2006 ID - Belenguer2006 ER - TY - JOUR AU - Vuyst, L. AU - Leroy, F. PY - 2011 DA - 2011// TI - Cross-feeding between bifidobacteria and butyrate-producing colon bacteria explains bifdobacterial competitiveness, butyrate production, and gas production JO - Int J Food Microbiol VL - 149 UR - https://doi.org/10.1016/j.ijfoodmicro.2011.03.003 DO - 10.1016/j.ijfoodmicro.2011.03.003 ID - Vuyst2011 ER - TY - STD TI - Sikora A, Błaszczyk M, Jurkowski M, Zielenkiewicz U. Lactic acid bacteria in hydrogen-producing consortia: on purpose or by coincidence? In Kongo M. Rijeka (eds) Lactic acid bacteria—R & D for food, health and livestock purposes. InTech; 2013: Ch. 21. ID - ref4 ER - TY - JOUR AU - Diez-Gonzalez, F. AU - Russell, J. B. AU - Hunter, J. B. PY - 1995 DA - 1995// TI - The role of an NAD-independent lactate dehydrogenase and acetate in the utilization of lactate by Clostridium acetobutylicum strain P262 JO - Arch Microbiol VL - 164 UR - https://doi.org/10.1007/BF02568732 DO - 10.1007/BF02568732 ID - Diez-Gonzalez1995 ER - TY - JOUR AU - Shen, G. -. J. AU - Annous, B. A. AU - Lovitt, R. W. AU - Jain, M. K. AU - Zeikus, J. G. PY - 1996 DA - 1996// TI - Biochemical route and control of butyrate synthesis in Butyribacterium methylotrophicum JO - Appl Microbiol Biotechnol VL - 45 UR - https://doi.org/10.1007/s002530050696 DO - 10.1007/s002530050696 ID - Shen1996 ER - TY - JOUR AU - Matsumoto, M. AU - Nishimura, Y. PY - 2007 DA - 2007// TI - Hydrogen production by fermentation using acetic acid and lactic acid JO - J Biosci Bioeng VL - 103 UR - https://doi.org/10.1263/jbb.103.236 DO - 10.1263/jbb.103.236 ID - Matsumoto2007 ER - TY - JOUR AU - Baghchehsaraee, B. AU - Nakhla, G. AU - Karamanev, D. AU - Margaritis, A. PY - 2009 DA - 2009// TI - Effect of extrinsic lactic acid on fermentative hydrogen production JO - Int J Hydrogen Energy VL - 34 UR - https://doi.org/10.1016/j.ijhydene.2009.01.010 DO - 10.1016/j.ijhydene.2009.01.010 ID - Baghchehsaraee2009 ER - TY - JOUR AU - Kim, T. -. H. AU - Lee, Y. AU - Chang, K. -. H. AU - Hwang, S. -. J. PY - 2012 DA - 2012// TI - Effects of initial lactic acid concentration, HRTs, and OLRs on bio-hydrogen production from lactate-type fermentation JO - Biores Technol VL - 103 UR - https://doi.org/10.1016/j.biortech.2011.09.093 DO - 10.1016/j.biortech.2011.09.093 ID - Kim2012 ER - TY - JOUR AU - Jo, J. H. AU - Lee, D. S. AU - Park, D. AU - Park, J. M. PY - 2008 DA - 2008// TI - Biological hydrogen production by immobilized cells of Clostridium tyrobutyricum JM1 isolated from a food waste treatment process JO - Biores Technol VL - 99 UR - https://doi.org/10.1016/j.biortech.2007.11.067 DO - 10.1016/j.biortech.2007.11.067 ID - Jo2008 ER - TY - JOUR AU - Juang, C. -. P. AU - Whang, L. -. M. AU - Cheng, H. -. H. PY - 2011 DA - 2011// TI - Evaluation of bioenergy recovery processes treating organic residues from ethanol fermentation process JO - Biores Technol VL - 102 UR - https://doi.org/10.1016/j.biortech.2010.10.069 DO - 10.1016/j.biortech.2010.10.069 ID - Juang2011 ER - TY - JOUR AU - Etchebehere, C. AU - Castelló, E. AU - Wenzel, J. AU - Pilar, A. n. z. o. l. a. -. R. o. j. a. s. M. AU - Borzacconi, L. AU - Buitrón, G. AU - Cabrol, L. AU - Carminato, V. M. AU - Carrillo-Reyes, J. AU - Cisneros-Pérez, C. PY - 2016 DA - 2016// TI - Microbial communities from 20 different hydrogen-producing reactors studied by 454 pyrosequencing JO - Appl Microbiol Biotechnol VL - 100 UR - https://doi.org/10.1007/s00253-016-7325-y DO - 10.1007/s00253-016-7325-y ID - Etchebehere2016 ER - TY - CHAP AU - Andreesen, J. R. AU - Bahl, H. AU - Gottschalk, G. ED - Minton, N. P. ED - Clarke, D. J. PY - 1989 DA - 1989// TI - Introduction to the physiology and biochemistry of the genus Clostridium BT - Clostridia PB - Springer US CY - Boston UR - https://doi.org/10.1007/978-1-4757-9718-3_2 DO - 10.1007/978-1-4757-9718-3_2 ID - Andreesen1989 ER - TY - JOUR AU - Li, F. AU - Hinderberger, J. AU - Seedorf, H. AU - Zhang, J. AU - Buckel, W. AU - Thauer, R. K. PY - 2008 DA - 2008// TI - Coupled ferredoxin and crotonyl coenzyme A (CoA) reduction with NADH catalyzed by the butyryl-CoA dehydrogenase/Etf complex from Clostridium kluyveri JO - J Bacteriol VL - 190 UR - https://doi.org/10.1128/JB.01417-07 DO - 10.1128/JB.01417-07 ID - Li2008 ER - TY - JOUR AU - Buckel, W. AU - Thauer, R. K. PY - 2018 DA - 2018// TI - Flavin-based electron bifurcation, a new mechanism of biological energy coupling JO - Chem Rev VL - 118 UR - https://doi.org/10.1021/acs.chemrev.7b00707 DO - 10.1021/acs.chemrev.7b00707 ID - Buckel2018 ER - TY - JOUR AU - Demmer, J. K. AU - Pal Chowdhury, N. AU - Selmer, T. AU - Ermler, U. AU - Buckel, W. PY - 2017 DA - 2017// TI - The semiquinone swing in the bifurcating electron transferring flavoprotein/butyryl-CoA dehydrogenase complex from Clostridium difficile JO - Nat Commun VL - 8 UR - https://doi.org/10.1038/s41467-017-01746-3 DO - 10.1038/s41467-017-01746-3 ID - Demmer2017 ER - TY - JOUR AU - Louis, P. AU - Flint, H. J. PY - 2009 DA - 2009// TI - Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine JO - FEMS Microbiol Lett VL - 294 UR - https://doi.org/10.1111/j.1574-6968.2009.01514.x DO - 10.1111/j.1574-6968.2009.01514.x ID - Louis2009 ER - TY - JOUR AU - Peters, J. W. AU - Miller, A. -. F. AU - Jones, A. K. AU - King, P. W. AU - Adams, M. W. W. PY - 2016 DA - 2016// TI - Electron bifurcation JO - Curr Opin Chem Biol VL - 31 UR - https://doi.org/10.1016/j.cbpa.2016.03.007 DO - 10.1016/j.cbpa.2016.03.007 ID - Peters2016 ER - TY - JOUR AU - Buckel, W. AU - Thauer, R. K. PY - 2018 DA - 2018// TI - Flavin-based electron bifurcation, ferredoxin, flavodoxin, and anaerobic respiration with protons (Ech) or NAD+ (Rnf) as electron acceptors: a historical review JO - Front Microbiol. VL - 9 UR - https://doi.org/10.3389/fmicb.2018.00401 DO - 10.3389/fmicb.2018.00401 ID - Buckel2018 ER - TY - JOUR AU - Weghoff, M. C. AU - Bertsch, J. AU - Muller, V. PY - 2015 DA - 2015// TI - A novel mode of lactate metabolism in strictly anaerobic bacteria JO - Environ Microbiol VL - 17 UR - https://doi.org/10.1111/1462-2920.12493 DO - 10.1111/1462-2920.12493 ID - Weghoff2015 ER - TY - JOUR AU - Detman, A. AU - Mielecki, D. AU - Pleśniak, Ł. AU - Bucha, M. AU - Janiga, M. AU - Matyasik, I. AU - Chojnacka, A. AU - Jędrysek, M. -. O. AU - Błaszczyk, M. K. AU - Sikora, A. PY - 2018 DA - 2018// TI - Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle JO - Biotechnol Biofuels VL - 11 UR - https://doi.org/10.1186/s13068-018-1106-z DO - 10.1186/s13068-018-1106-z ID - Detman2018 ER - TY - JOUR AU - Garcia Costas, A. M. AU - Poudel, S. AU - Miller, A. F. AU - Schut, G. J. AU - Ledbetter, R. N. AU - Fixen, K. R. AU - Seefeldt, L. C. AU - Adams, M. W. W. AU - Harwood, C. S. AU - Boyd, E. S. AU - Peters, J. W. PY - 2017 DA - 2017// TI - Defining electron bifurcation in the electron-transferring flavoprotein family JO - J Bacteriol VL - 199 UR - https://doi.org/10.1128/JB.00440-17 DO - 10.1128/JB.00440-17 ID - Garcia Costas2017 ER - TY - JOUR AU - Chojnacka, A. AU - Blaszczyk, M. K. AU - Szczesny, P. AU - Nowak, K. AU - Suminska, M. AU - Tomczyk-Zak, K. AU - Zielenkiewicz, U. AU - Sikora, A. PY - 2011 DA - 2011// TI - Comparative analysis of hydrogen-producing bacterial biofilms and granular sludge formed in continuous cultures of fermentative bacteria JO - Bioresour Technol VL - 102 UR - https://doi.org/10.1016/j.biortech.2011.08.063 DO - 10.1016/j.biortech.2011.08.063 ID - Chojnacka2011 ER - TY - BOOK AU - Miller, J. H. PY - 1972 DA - 1972// TI - Experiments in molecular genetics PB - Cold Spring Harbor CY - Cold Spring Harbor Laboratory ID - Miller1972 ER - TY - JOUR AU - Detman, A. AU - Chojnacka, A. AU - Błaszczyk, M. AU - Piotrowski, J. AU - Sikora, A. PY - 2017 DA - 2017// TI - Biohydrogen and biomethane (Biogas) production in the consecutive stages of anaerobic digestion of molasses JO - Pol J Environ Stud VL - 26 UR - https://doi.org/10.15244/pjoes/68149 DO - 10.15244/pjoes/68149 ID - Detman2017 ER - TY - JOUR AU - Morgulis, A. AU - Coulouris, G. AU - Raytselis, Y. AU - Madden, T. L. AU - Agarwala, R. AU - Schaffer, A. A. PY - 2008 DA - 2008// TI - Database indexing for production MegaBLAST searches JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn322 DO - 10.1093/bioinformatics/btn322 ID - Morgulis2008 ER - TY - JOUR AU - Kearse, M. AU - Moir, R. AU - Wilson, A. AU - Stones-Havas, S. AU - Cheung, M. AU - Sturrock, S. AU - Buxton, S. AU - Cooper, A. AU - Markowitz, S. AU - Duran, C. PY - 2012 DA - 2012// TI - Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts199 DO - 10.1093/bioinformatics/bts199 ID - Kearse2012 ER - TY - JOUR AU - Duncan, S. H. AU - Barcenilla, A. AU - Stewart, C. S. AU - Pryde, S. E. AU - Flint, H. J. PY - 2002 DA - 2002// TI - Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine JO - Appl Environ Microbiol VL - 68 UR - https://doi.org/10.1128/AEM.68.10.5186-5190.2002 DO - 10.1128/AEM.68.10.5186-5190.2002 ID - Duncan2002 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - CHAP AU - Jukes, T. H. AU - Cantor, C. R. ED - Munro, H. N. PY - 1969 DA - 1969// TI - Evolution of protein molecules BT - Mammalian Protein Metabolism PB - Academic Press CY - New York UR - https://doi.org/10.1016/B978-1-4832-3211-9.50009-7 DO - 10.1016/B978-1-4832-3211-9.50009-7 ID - Jukes1969 ER - TY - JOUR AU - Michener, C. D. AU - Sokal, R. R. PY - 1957 DA - 1957// TI - A quantitative approach to a problem in classification JO - Evolution VL - 11 UR - https://doi.org/10.1111/j.1558-5646.1957.tb02884.x DO - 10.1111/j.1558-5646.1957.tb02884.x ID - Michener1957 ER - TY - JOUR AU - Fang, H. H. AU - Liu, H. AU - Zhang, T. PY - 2002 DA - 2002// TI - Characterization of a hydrogen-producing granular sludge JO - Biotechnol Bioeng VL - 78 UR - https://doi.org/10.1002/bit.10174 DO - 10.1002/bit.10174 ID - Fang2002 ER - TY - JOUR AU - Li, C. AU - Zhang, T. AU - Fang, H. H. P. PY - 2006 DA - 2006// TI - Fermentative hydrogen production in packed-bed and packing-free upflow reactors JO - Water Sci Technol VL - 54 UR - https://doi.org/10.2166/wst.2006.712 DO - 10.2166/wst.2006.712 ID - Li2006 ER - TY - JOUR AU - Hung, C. -. H. AU - Lee, K. -. S. AU - Cheng, L. -. H. AU - Huang, Y. -. H. AU - Lin, P. -. J. AU - Chang, J. -. S. PY - 2007 DA - 2007// TI - Quantitative analysis of a high-rate hydrogen-producing microbial community in anaerobic agitated granular sludge bed bioreactors using glucose as substrate JO - Appl Microbiol Biotechnol VL - 75 UR - https://doi.org/10.1007/s00253-007-0854-7 DO - 10.1007/s00253-007-0854-7 ID - Hung2007 ER - TY - JOUR AU - Yang, P. AU - Zhang, R. AU - McGarvey, J. A. AU - Benemann, J. R. PY - 2007 DA - 2007// TI - Biohydrogen production from cheese processing wastewater by anaerobic fermentation using mixed microbial communities JO - Int J Hydrogen Energy VL - 32 UR - https://doi.org/10.1016/j.ijhydene.2007.07.038 DO - 10.1016/j.ijhydene.2007.07.038 ID - Yang2007 ER - TY - JOUR AU - Jo, J. H. AU - Jeon, C. O. AU - Lee, D. S. AU - Park, J. M. PY - 2007 DA - 2007// TI - Process stability and microbial community structure in anaerobic hydrogen-producing microflora from food waste containing kimchi JO - J Biotechnol VL - 131 UR - https://doi.org/10.1016/j.jbiotec.2007.07.492 DO - 10.1016/j.jbiotec.2007.07.492 ID - Jo2007 ER - TY - JOUR AU - Lo, Y. -. C. AU - Chen, W. -. M. AU - Hung, C. -. H. AU - Chen, S. -. D. AU - Chang, J. -. S. PY - 2008 DA - 2008// TI - Dark H2 fermentation from sucrose and xylose using H2-producing indigenous bacteria: feasibility and kinetic studies JO - Water Res VL - 42 UR - https://doi.org/10.1016/j.watres.2007.08.023 DO - 10.1016/j.watres.2007.08.023 ID - Lo2008 ER - TY - JOUR AU - Wu, S. Y. AU - Hung, C. H. AU - Lin, C. N. AU - Chen, H. W. AU - Lee, A. S. AU - Chang, J. S. PY - 2006 DA - 2006// TI - Fermentative hydrogen production and bacterial community structure in high-rate anaerobic bioreactors containing silicone-immobilized and self-flocculated sludge JO - Biotechnol Bioeng VL - 93 UR - https://doi.org/10.1002/bit.20800 DO - 10.1002/bit.20800 ID - Wu2006 ER - TY - JOUR AU - Muñoz-Tamayo, R. AU - Laroche, B. AU - Walter, É. AU - Doré, J. AU - Duncan, S. H. AU - Flint, H. J. AU - Leclerc, M. PY - 2011 DA - 2011// TI - Kinetic modelling of lactate utilization and butyrate production by key human colonic bacterial species JO - FEMS Microbiol Ecol VL - 76 UR - https://doi.org/10.1111/j.1574-6941.2011.01085.x DO - 10.1111/j.1574-6941.2011.01085.x ID - Muñoz-Tamayo2011 ER -