TY - JOUR AU - Sandkvist, M. AU - Bagdasarian, M. PY - 1996 DA - 1996// TI - Secretion of recombinant proteins by Gram-negative bacteria JO - Curr Opin Biotechnol. UR - https://doi.org/10.1016/s0958-1669(96)80053-x DO - 10.1016/s0958-1669(96)80053-x ID - Sandkvist1996 ER - TY - JOUR AU - Osborne, A. R. AU - Rapoport, T. A. AU - Berg, B. PY - 2005 DA - 2005// TI - Protein translocation by the Sec61/SecY channel JO - Annu Rev Cell Dev Biol. UR - https://doi.org/10.1146/annurev.cellbio.21.012704.133214 DO - 10.1146/annurev.cellbio.21.012704.133214 ID - Osborne2005 ER - TY - JOUR AU - Robson, A. AU - Collinson, I. PY - 2006 DA - 2006// TI - The structure of the Sec complex and the problem of protein translocation JO - EMBO Rep. UR - https://doi.org/10.1038/sj.embor.7400832 DO - 10.1038/sj.embor.7400832 ID - Robson2006 ER - TY - JOUR AU - Palmer, T. AU - Berks, B. C. PY - 2012 DA - 2012// TI - The Twin-arginine translocation (Tat) protein export pathway JO - Nat Rev Microbiol. UR - https://doi.org/10.1038/nrmicro2814 DO - 10.1038/nrmicro2814 ID - Palmer2012 ER - TY - JOUR AU - Müller, M. AU - Klösgen, R. B. PY - 2005 DA - 2005// TI - The Tat pathway in bacteria and chloroplasts (review) JO - Mol Membr Biol. UR - https://doi.org/10.1080/09687860500041809 DO - 10.1080/09687860500041809 ID - Müller2005 ER - TY - JOUR AU - Berks, B. C. PY - 2015 DA - 2015// TI - The Twin-arginine protein translocation pathway JO - Annu Rev Biochem. UR - https://doi.org/10.1146/annurev-biochem-060614-034251 DO - 10.1146/annurev-biochem-060614-034251 ID - Berks2015 ER - TY - BOOK AU - Böck, A. AU - Curtiss, R. I. AU - Kaper, J. B. AU - Karp, P. D. AU - Neidhardt, F. C. AU - Nyström, T. PY - 2011 DA - 2011// TI - EcoSal— Escherichia coli and Salmonella: cellular and molecular biology PB - ASM Press CY - Washington, DC ID - Böck2011 ER - TY - JOUR AU - Rodrigue, A. AU - Chanal, A. AU - Beck, K. AU - Müller, M. AU - Wu, L. F. PY - 1999 DA - 1999// TI - Co-translocation of a Periplasmic Enzyme complex by a Hitchhiker mechanism through the bacterial tat pathway JO - J Biol Chem. UR - https://doi.org/10.1074/jbc.274.19.13223 DO - 10.1074/jbc.274.19.13223 ID - Rodrigue1999 ER - TY - JOUR AU - Dolata, K. M. AU - Montero, I. G. AU - Miller, W. AU - Sievers, S. AU - Sura, T. AU - Wolff, C. PY - 2018 DA - 2018// TI - Far-reaching cellular consequences of tat deletion in Escherichia coli revealed by comprehensive proteome analyses JO - Microbiol Res. UR - https://doi.org/10.1016/j.micres.2018.10.008 DO - 10.1016/j.micres.2018.10.008 ID - Dolata2018 ER - TY - JOUR AU - Alanen, H. I. AU - Walker, K. L. AU - Lourdes, M. AU - Matos, C. F. AU - Bönisch, S. AU - Robinson, C. PY - 2015 DA - 2015// TI - Efficient export of human growth hormone, interferon α2b and antibody fragments to the periplasm by the Escherichia coli Tat pathway in the absence of prior disulfide bond formation JO - Biochim Biophys Acta Mol Cell Res. UR - https://doi.org/10.1016/j.bbamcr.2014.12.027 DO - 10.1016/j.bbamcr.2014.12.027 ID - Alanen2015 ER - TY - JOUR AU - Prinz, W. A. AU - Åslund, F. AU - Holmgren, A. AU - Beckwith, J. PY - 1997 DA - 1997// TI - The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in the Escherichia coli cytoplasm JO - J Biol Chem. UR - https://doi.org/10.1074/jbc.272.25.15661 DO - 10.1074/jbc.272.25.15661 ID - Prinz1997 ER - TY - JOUR AU - DeLisa, M. P. AU - Tullman, D. AU - Georgiou, G. PY - 2003 DA - 2003// TI - Folding quality control in the export of proteins by the bacterial Twin-arginine translocation pathway JO - Proc Natl Acad Sci USA UR - https://doi.org/10.1073/pnas.0937838100 DO - 10.1073/pnas.0937838100 ID - DeLisa2003 ER - TY - JOUR AU - Matos, C. F. AU - Robinson, C. AU - Alanen, H. I. AU - Prus, P. AU - Uchida, Y. AU - Ruddock, L. W. PY - 2014 DA - 2014// TI - Efficient export of prefolded, disulfide-bonded recombinant proteins to the periplasm by the Tat pathway in Escherichia coli CyDisCo strains JO - Biotechnol Prog. UR - https://doi.org/10.1002/btpr.1858 DO - 10.1002/btpr.1858 ID - Matos2014 ER - TY - JOUR AU - Jones, A. S. AU - Austerberry, J. I. AU - Dajani, R. AU - Warwicker, J. AU - Curtis, R. AU - Derrick, J. P. PY - 2016 DA - 2016// TI - Proofreading of substrate structure by the Twin-Arginine Translocase is highly dependent on substrate conformational flexibility but surprisingly tolerant of surface charge and hydrophobicity changes JO - Biochim Biophys Acta Mol Cell Res. UR - https://doi.org/10.1016/j.bbamcr.2016.09.006 DO - 10.1016/j.bbamcr.2016.09.006 ID - Jones2016 ER - TY - JOUR AU - Randall, L. L. AU - Hardy, J. S. PY - 1986 DA - 1986// TI - Correlation of competence for export with lack of tertiary structure of the mature species: A study in vivo of maltose-binding protein in E. coli JO - Cell. UR - https://doi.org/10.1016/0092-8674(86)90074-7 DO - 10.1016/0092-8674(86)90074-7 ID - Randall1986 ER - TY - JOUR AU - Pierce, J. J. AU - Turner, C. AU - Keshavarz-Moore, E. AU - Dunnill, P. PY - 1997 DA - 1997// TI - Factors determining more efficient large-scale release of a periplasmic enzyme from E. coli using lysozyme JO - J Biotechnol. UR - https://doi.org/10.1016/s0168-1656(97)00116-8 DO - 10.1016/s0168-1656(97)00116-8 ID - Pierce1997 ER - TY - JOUR AU - McKay, A. L. AU - Peters, A. C. AU - Wimpenny, J. W. T. PY - 1997 DA - 1997// TI - Determining specific growth rates in different regions of Salmonella typhimurium colonies JO - Lett Appl Microbiol. UR - https://doi.org/10.1046/j.1472-765x.1997.00354.x DO - 10.1046/j.1472-765x.1997.00354.x ID - McKay1997 ER - TY - JOUR AU - Muntel, J. AU - Hecker, M. AU - Becher, D. PY - 2012 DA - 2012// TI - An exclusion list based label-free proteome quantification approach using an LTQ Orbitrap JO - Rapid Commun. Mass Spectrom. UR - https://doi.org/10.1002/rcm.6147 DO - 10.1002/rcm.6147 ID - Muntel2012 ER - TY - JOUR AU - Rappsilber, J. AU - Mann, M. AU - Ishihama, Y. PY - 2007 DA - 2007// TI - Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips JO - Nat Protoc. UR - https://doi.org/10.1038/nprot.2007.261 DO - 10.1038/nprot.2007.261 ID - Rappsilber2007 ER - TY - JOUR AU - Zühlke, D. AU - Dörries, K. AU - Bernhardt, J. AU - Maaß, S. AU - Muntel, J. AU - Liebscher, V. PY - 2016 DA - 2016// TI - Costs of life—dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis JO - Sci Rep. UR - https://doi.org/10.1038/srep28172 DO - 10.1038/srep28172 ID - Zühlke2016 ER - TY - JOUR AU - Bradford, M. M. PY - 1976 DA - 1976// TI - A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding JO - Anal Biochem. UR - https://doi.org/10.1016/0003-2697(76),90527-3 DO - 10.1016/0003-2697(76),90527-3 ID - Bradford1976 ER - TY - JOUR AU - Cox, J. AU - Mann, M. PY - 2006 DA - 2006// TI - MaxQuant enables high peptide identification rates, individualized ppb-range mass accuracies and proteome-wide protein quantification JO - Nat Biotechnol. UR - https://doi.org/10.1038/nbt.1511 DO - 10.1038/nbt.1511 ID - Cox2006 ER - TY - JOUR AU - Cox, J. AU - Neuhauser, N. AU - Michalski, A. AU - Scheltema, R. A. AU - Olsen, J. V. AU - Mann, M. PY - 2011 DA - 2011// TI - Andromeda: a peptide search engine integrated into the MaxQuant environment JO - J Proteome Res. UR - https://doi.org/10.1021/pr101065j DO - 10.1021/pr101065j ID - Cox2011 ER - TY - JOUR AU - Overbeek, R. AU - Olson, R. AU - Pusch, G. D. AU - Olsen, G. J. AU - Davis, J. J. AU - Disz, T. PY - 2014 DA - 2014// TI - The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST) JO - Nucleic Acids Res. UR - https://doi.org/10.1093/nar/gkt1226 DO - 10.1093/nar/gkt1226 ID - Overbeek2014 ER - TY - JOUR AU - Orfanoudaki, G. AU - Economou, A. PY - 2014 DA - 2014// TI - Proteome-wide subcellular topologies of E coli polypeptides database (STEPdb) JO - Mol. Cell Proteomics. UR - https://doi.org/10.1074/mcp.O114.041137 DO - 10.1074/mcp.O114.041137 ID - Orfanoudaki2014 ER - TY - JOUR AU - Bernhardt, J. AU - Michalik, S. AU - Wollscheid, B. AU - Völker, U. AU - Schmidt, F. PY - 2013 DA - 2013// TI - Proteomics approaches for the analysis of enriched microbial subpopulations and visualization of complex functional information JO - Curr Opin Biotechnol. UR - https://doi.org/10.1016/j.copbio.2012.10.009 DO - 10.1016/j.copbio.2012.10.009 ID - Bernhardt2013 ER - TY - JOUR AU - Dorken, G. AU - Ferguson, G. P. AU - French, C. E. AU - Poon, W. C. K. PY - 2012 DA - 2012// TI - Aggregation by depletion attraction in cultures of bacteria producing exopolysaccharide JO - J R Soc Interface. UR - https://doi.org/10.1098/rsif.2012.0498 DO - 10.1098/rsif.2012.0498 ID - Dorken2012 ER - TY - JOUR AU - Bentley, W. E. AU - Mirjalili, N. AU - Andersen, D. C. AU - Davis, R. H. AU - Kompala, D. S. PY - 1990 DA - 1990// TI - Plasmid-encoded protein: the principal factor in the “metabolic burden” associated with recombinant bacteria JO - Biotechnol Bioeng. UR - https://doi.org/10.1002/bit.260350704 DO - 10.1002/bit.260350704 ID - Bentley1990 ER - TY - JOUR AU - Natale, P. AU - Brüser, T. AU - Driessen, A. J. M. PY - 2008 DA - 2008// TI - Sec- and Tat-mediated protein secretion across the bacterial cytoplasmic membrane—distinct translocases and mechanisms JO - Biochim Biophys Acta UR - https://doi.org/10.1016/j.bbamem.2007.07.015 DO - 10.1016/j.bbamem.2007.07.015 ID - Natale2008 ER - TY - JOUR AU - Browning, D. F. AU - Richards, K. L. AU - Peswani, A. R. AU - Roobol, J. AU - Busby, S. J. W. AU - Robinson, C. PY - 2017 DA - 2017// TI - Escherichia coli “TatExpress” strains super-secrete human growth hormone into the bacterial periplasm by the Tat pathway JO - Biotechnol Bioeng. UR - https://doi.org/10.1002/bit.26434 DO - 10.1002/bit.26434 ID - Browning2017 ER - TY - JOUR AU - Saecker, R. M. AU - Record, M. T. AU - Dehaseth, P. L. PY - 2011 DA - 2011// TI - Mechanism of bacterial transcription initiation: RNA polymerase-Promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis JO - J Mol Biol. UR - https://doi.org/10.1016/j.jmb.2011.01.018 DO - 10.1016/j.jmb.2011.01.018 ID - Saecker2011 ER - TY - JOUR AU - Paget, M. PY - 2015 DA - 2015// TI - Bacterial Sigma Factors and Anti-Sigma Factors: Structure JO - Function and Distribution. Biomolecules. UR - https://doi.org/10.3390/biom5031245 DO - 10.3390/biom5031245 ID - Paget2015 ER - TY - JOUR AU - Meyer, R. R. AU - Laine, P. S. PY - 1990 DA - 1990// TI - The single-stranded DNA-binding protein of Escherichia coli JO - Microbiol Rev. VL - 54 ID - Meyer1990 ER - TY - JOUR AU - Finkel, S. E. AU - Kolter, R. PY - 2001 DA - 2001// TI - DNA as a nutrient: novel role for bacterial competence gene homologs JO - J Bacteriol UR - https://doi.org/10.1128/jb.183.21.6288-6293.2001 DO - 10.1128/jb.183.21.6288-6293.2001 ID - Finkel2001 ER - TY - JOUR AU - Kurono, N. AU - Matsuda, A. AU - Etchuya, R. AU - Sobue, R. AU - Sasaki, Y. AU - Ito, M. PY - 2012 DA - 2012// TI - Genome-wide screen for Escherichia coli genes involved in repressing cell-to-cell transfer of non-conjugative plasmids JO - Biochem Biophys Res Commun. UR - https://doi.org/10.1016/j.bbrc.2012.10.098 DO - 10.1016/j.bbrc.2012.10.098 ID - Kurono2012 ER - TY - JOUR AU - Anfinsen, C. B. PY - 1973 DA - 1973// TI - Principles that govern the folding of protein chains JO - Science. UR - https://doi.org/10.1126/science.181.4096.223 DO - 10.1126/science.181.4096.223 ID - Anfinsen1973 ER - TY - JOUR AU - Powers, E. T. AU - William, E. B. PY - 2013 DA - 2013// TI - Diversity in the origins of proteostasis networks- a driver for protein function in evolution JO - Nat Rev Mol Cell Biol. UR - https://doi.org/10.1038/nrm3542 DO - 10.1038/nrm3542 ID - Powers2013 ER - TY - JOUR AU - Ziemienowicz, A. AU - Skowyra, D. AU - Zeilstra-Ryalls, J. AU - Fayet, O. AU - Georgopoulos, C. AU - Zylicz, M. PY - 1993 DA - 1993// TI - Both the Escherichia coli chaperone systems, GroEL/GroES and DnaK/DnaJ/GrpE, can reactivate heat-treated RNA polymerase. Different mechanisms for the same activity JO - J Biol Chem. VL - 34 ID - Ziemienowicz1993 ER - TY - JOUR AU - Kedzierska, S. AU - Chesnokova, L. S. AU - Witt, S. N. AU - Zolkiewski, M. PY - 2015 DA - 2015// TI - Interactions within the ClpB/DnaK bi-chaperone system from Escherichia coli JO - Arch Biochem Biophys. UR - https://doi.org/10.1016/j.abb.2005.10.005 DO - 10.1016/j.abb.2005.10.005 ID - Kedzierska2015 ER - TY - JOUR AU - Thomas, J. G. AU - Baneyx, F. PY - 2000 DA - 2000// TI - ClpB and HtpG facilitate de novo protein folding in stressed Escherichia coli cells JO - Mol Microbiol. UR - https://doi.org/10.1046/j.1365-2958.2000.01951.x DO - 10.1046/j.1365-2958.2000.01951.x ID - Thomas2000 ER - TY - JOUR AU - Quan, S. AU - Koldewey, P. AU - Tapley, T. AU - Kirsch, N. AU - Ruane, K. M. AU - Pfizenmaier, J. PY - 2011 DA - 2011// TI - Genetic selection designed to stabilize proteins uncovers a chaperone called Spy JO - Nat Struct Mol Biol. UR - https://doi.org/10.1038/nsmb.2016 DO - 10.1038/nsmb.2016 ID - Quan2011 ER - TY - JOUR AU - Sklar, J. G. AU - Wu, T. AU - Kahne, D. AU - Silhavy, T. J. PY - 2007 DA - 2007// TI - Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli JO - Genes Dev. UR - https://doi.org/10.1101/gad.1581007 DO - 10.1101/gad.1581007 ID - Sklar2007 ER - TY - JOUR AU - Narita, S. AU - Masui, C. AU - Suzuki, T. AU - Dohmae, N. AU - Akiyama, Y. PY - 2013 DA - 2013// TI - Protease homolog BepA (YfgC) promotes assembly and degradation of—barrel membrane proteins in Escherichia coli JO - Proc Natl Acad Sci USA. UR - https://doi.org/10.1073/pnas.1312012110 DO - 10.1073/pnas.1312012110 ID - Narita2013 ER - TY - JOUR AU - Debarbieux, L. AU - Beckwith, J. PY - 1998 DA - 1998// TI - The reductive enzyme thioredoxin 1 acts as an oxidant when it is exported to the Escherichia coli periplasm JO - Proc Natl Acad Sci USA VL - 95 UR - https://doi.org/10.1073/pnas.95.18.10751 DO - 10.1073/pnas.95.18.10751 ID - Debarbieux1998 ER - TY - JOUR AU - Eser, M. AU - Masip, L. AU - Kadokura, H. AU - Georgiou, G. AU - Beckwith, J. PY - 2009 DA - 2009// TI - Disulfide bond formation by exported glutaredoxin indicates glutathione’s presence in the E. coli periplasm JO - PNAS. UR - https://doi.org/10.1073/pnas.0812596106 DO - 10.1073/pnas.0812596106 ID - Eser2009 ER - TY - JOUR AU - Stewart, E. J. AU - Åslund, F. AU - Beckwith, J. PY - 1998 DA - 1998// TI - Disulfide bond formation in the Escherichia coli cytoplasm: an in vivo role reversal for the thioredoxins JO - EMBO J UR - https://doi.org/10.1093/emboj/17.19.5543 DO - 10.1093/emboj/17.19.5543 ID - Stewart1998 ER - TY - JOUR AU - Danese, P. N. AU - Silhavy, T. J. PY - 1998 DA - 1998// TI - Targeting and assembly of periplasmic and outer-membrane proteins in Escherichia coli JO - Annu Rev Genet. UR - https://doi.org/10.1146/annurev.genet.32.1.59 DO - 10.1146/annurev.genet.32.1.59 ID - Danese1998 ER - TY - JOUR AU - Petriman, N. A. AU - Jauß, B. AU - Hufnagel, A. AU - Franz, L. AU - Sachelaru, I. AU - Drepper, F. PY - 2018 DA - 2018// TI - The interaction network of the YidC insertase with the SecYEG translocon, SRP and the SRP receptor FtsY JO - Sci Rep. UR - https://doi.org/10.1038/s41598-017-19019-w DO - 10.1038/s41598-017-19019-w ID - Petriman2018 ER - TY - JOUR AU - Gomolplitinant, K. M. AU - Saier, M. H. PY - 2011 DA - 2011// TI - Evolution of the oligopeptide transporter family JO - J Membr Biol. UR - https://doi.org/10.1007/s00232-011-9347-9 DO - 10.1007/s00232-011-9347-9 ID - Gomolplitinant2011 ER - TY - JOUR AU - Wagner, S. AU - Pop, O. I. AU - Haan, G. J. AU - Baars, L. AU - Koningstein, G. AU - Klepsch, M. M. PY - 2008 DA - 2008// TI - Biogenesis of MalF and the MalFGK(2) maltose transport complex in Escherichia coli requires YidC JO - J Biol Chem. UR - https://doi.org/10.1016/j.bbabio.2011.12.006 DO - 10.1016/j.bbabio.2011.12.006 ID - Wagner2008 ER - TY - JOUR AU - Bloois, E. AU - Nagamori, S. AU - Koningstein, G. AU - Ullers, R. S. AU - Preuss, M. AU - Oudega, B. PY - 2005 DA - 2005// TI - The Sec-independent function of Escherichia coli YidC is evolutionary-conserved and essential JO - J Biol Chem. UR - https://doi.org/10.1074/jbc.M414094200 DO - 10.1074/jbc.M414094200 ID - Bloois2005 ER - TY - JOUR AU - Hauer, R. S. AU - Schlesier, R. AU - Heilmann, K. AU - Dittmar, J. AU - Jakob, M. AU - Klosgen, R. B. PY - 2013 DA - 2013// TI - Enough is enough: TatA demand during Tat-dependent protein transport JO - Biochim Biophys Acta. UR - https://doi.org/10.1016/j.bbamcr.2013.01.030 DO - 10.1016/j.bbamcr.2013.01.030 ID - Hauer2013 ER - TY - JOUR AU - Sargent, F. PY - 1998 DA - 1998// TI - Overlapping functions of components of a bacterial Sec-independent protein export pathway JO - EMBO J VL - 17 UR - https://doi.org/10.1093/emboj/17.13.3640 DO - 10.1093/emboj/17.13.3640 ID - Sargent1998 ER - TY - JOUR AU - Diderichsen, B. PY - 1980 DA - 1980// TI - flu, a metastable gene controlling surface properties of Escherichia coli JO - J Bacteriol. VL - 141 ID - Diderichsen1980 ER - TY - JOUR AU - Ulett, G. C. AU - Valle, J. AU - Beloin, C. AU - Sherlock, O. AU - Ghigo, J. AU - Schembri, M. A. PY - 2007 DA - 2007// TI - Functional analysis of antigen 43 in uropathogenic Escherichia coli reveals a role in long-term persistence in the urinary tract JO - Infect Immun. UR - https://doi.org/10.1128/IAI.01952-06 DO - 10.1128/IAI.01952-06 ID - Ulett2007 ER - TY - JOUR AU - Zheng, M. AU - Åslund, F. AU - Storz, G. PY - 1998 DA - 1998// TI - Activation of the OxyR transcription factor by reversible disulfide bond formation JO - Science. UR - https://doi.org/10.1126/science.279.5357.1718 DO - 10.1126/science.279.5357.1718 ID - Zheng1998 ER - TY - JOUR AU - Dudina, O. AU - Geiselmanna, J. AU - Ogasawarad, H. AU - Ishihamab, A. AU - Lacoura, S. PY - 2014 DA - 2014// TI - Repression of flagellar genes in exponential phase by CsgD and CpxR, two crucial modulators of escherichia coli biofilm formation JO - J Bacteriol. UR - https://doi.org/10.1128/JB.00938-13 DO - 10.1128/JB.00938-13 ID - Dudina2014 ER -