Skip to main content

Table 1 Summary of CodeML results for branch-site analyses for aidP genes and 42 homologous gene obtained from NCBI BLAST result

From: Characterization of a novel N-acylhomoserine lactonase, AidP, from Antarctic Planococcus sp.

Model Site class Proportion Background ω Foreground ω lnL LRT Statistic *p-value
Branch-site Null 0 0.89838 0.02528 0.02528 − 11,269.67116 4.42473 0.035422
1 0.01171 1.000 1.000
2a 0.08875 0.02528 1.000
2b 0.00116 1.000 1.000
Branch-site Alternative Model 0 0.91669 0.02528 0.02528 − 11,267.458798
1 0.01197 1.000 1.000
2a 0.07041 0.02528 38.61239
2b 0.00092 1.000 38.61239
  1. Foreground branch contains aidP genes for four Planococcus spp.
  2. * p-value was determined using χ2 analysis with degree of freedom = 1