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Table 1 Primers using in this study

From: Investigation on the processing and improving the cleavage efficiency of furin cleavage sites in Pichia pastoris

Description

Primer name

Primer sequence (5′–3′)

Restriction site

Preparation for expression vectors

 pPIC9-GFP(RSIR)

RSIR F

CCGCTCGAGAGATCTATCAGAGTGAGCAAGGGCGAG

XhoI

RSIR R

CCGGAATTCTTACTTGTACAGCTCGTC

EcoRI

 pPIC9-GFP(RSII)

RSII F

CTCTCGAGAGATCTATAATAGTGAGCAAGGG

 

RSII R

CCCTTGCTCACTATTATAGATCTCTCGAGAG

 

 pPIC9-GFP(ISIR)

ISIR F

CTCTCGAGATATCTATAAGAGTGAGCAAGGG

 

ISIR R

CCCTTGCTCACTCTTATAGATATCTCGAGAG

 

 pPIC9-GFP(RSRR)

RSRR F

CTCTCGAGAGATCTAGAAGAGTGAGCAAGGG

 

RSRR R

CCCTTGCTCACTCTTCTAGATCTCTCGAGAG

 

 pPIC9-GFP(RSRI)

RSRI F

CTCTCGAGAGATCTAGAATAGTGAGCAAGGG

 

RSRI R

CCCTTGCTCACTATTCTAGATCTCTCGAGAG

 

 pPIC9-GFP(ISRR)

ISRR F

CTCTCGAGATATCTAGAAGAGTGAGCAAGGG

 

ISRR F

CCCTTGCTCACTCTTCTAGATATCTCGAGAG

 

 pPIC9-GFP(RSKR)

RSKR F

CTCTCGAGAGATCTAAGAGAGTGAGCAAGGG

 

RSKR R

CCCTTGCTCACTCTCTTAGATCTCTCGAGAG

 

 pPIC9-GFP(RSKI)

RSKI F

CTCTCGAGAGATCTAAGATAGTGAGCAAGGG

 

RSKI R

CCCTTGCTCACTCTCTTAGATATCTCGAGAG

 

 pPIC9-GFP(ISKR)

ISKR F

CTCTCGAGATATCTAAGAGAGTGAGCAAGGG

 

ISKR R

CCCTTGCTCACTATCTTAGATCTCTCGAGAG

 

 pGAPZ B-Kex2

Kex2 F

CCGGAATTCCGGATGTATTTGCCAGCACTT

EcoRI

Kex2 R

CCGCTCGAGCGGTTACAATGCCGCACGTTT

XhoI

 pGAPZ B-furin

Furin F

CCGGAATTCCGGATGGAGCTGAGGCCCTGG

EcoRI

Furin R

CCGCTCGAGTTAGAGGGCGCTCTGGTCTT

XhoI

Preparation for disruption vectors

 pYPS1Δ

Left arm F

TGCACTGCAGTAGCCGTTCCCGCGTGAAGA

PstI

Left arm R

CCGCTCGAGCGGACTAGCATATGTGGATTCTAG

XhoI

Right arm F

GGAAGATCTTCCTCCATCCTCTTTGGAGGTGTG

BglII

Right arm R

TGCACTGCAGTGCACTATACTATACACACG

PstI

 pKex2Δ

Left arm F

TGCACTGCAGTGCAATGTATTTGCCAGCAC

PstI

Left arm R

CCGCTCGAGCGGTGGTGGATGAAGCCCTTTAAT

XhoII

Right arm F

GGAAGATCTTCCACGGATATGGCAAGATCGATG

BglII

Right arm R

TGCACTGCAGTGCATTACAATGCCGCACGTTTGGG

PastI

Identification for disrupted strains

 GS115-ΔYps 1

YI F

CAGTATGACAATTTGCCAGC

 

YI R

TCCCCCGGTGTAATATGTTG

 

YO F

GGACTTCAGCGTTCTGAGGG

 

AOX1 R

GCAAATGGCATTCTGACATCC

 

 GS115-ΔKex 2

KI F

GGCTTGCTCTGCTGTGATGA

 

KI R

AGATCTTTGGCCTCCTGGG

 

KO F

CACCTGAAACTTAATACTCT

 

AOX1 R

GCAAATGGCATTCTGACATCC

 

Identification for GS115-furin and GS115-Kex2 strains

 GS115-furin

AOX1 F

GACTGGTTCCAATTGACAAGC

 

AOX1 R

GCAAATGGCATTCTGACATCC

 

 GS115-Kex2

GAP F

GTCCCTATTTCAATCAATTGAA

 

Kex2 R

GCCTCCTGGGTCAATTCATA

 

RT-PCR

 

 β-actin

β-actin F

CTCCAATGAACCCAAAGTCCAAC

 

β-actin R

GACAAAACGGCCTGAATAGAAAC

 

 Furin

RT-furin F

GGCATTGTGGTCTCCATTCT

 

RT-furin R

GCAGTTGCAGCTGTCATGTT

 

 Kex2

RT-Kex2 F

GGCATTGTGGTCTCCATTCT

 

RT-Kex2 R

GCAGTTGCAGCTGTCATGTT

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