Table 1 General characteristics of the 64 Geobacillus and Parageobacillus genomes used in this study
From: In silico characterization of the global Geobacillus and Parageobacillus secretome
Species | Strain | Isolation source | Geography | No. of contigs | % G + C | RAST CDSs | No. of secreted CDSs | % secreted CDSs | Cluster |
|---|---|---|---|---|---|---|---|---|---|
G. kaustophilus | HTA426 | Deep sea sediment | Mariana Trench | 2 (C) | 52 | 3986 | 114 | 2.86 | I |
G. stearothermophilus | ATCC 7953 | Underprocessed canned food | USA | 6 (HQD) | 52.4 | 3283 | 126 | 3.84 | II |
Geobacillus sp. | PSS2 | Dead, steaming treesm Puhimae thermal area | Kilauea Volcano, Hawaii | 2 (C) | 51.6 | 4095 | 128 | 3.13 | I |
Geobacillus sp. | Et2/3 | Geyser | El Tatio, Chile | 12 (HQD) | 49.1 | 3942 | 131 | 3.32 | I |
Geobacillus sp. | MAS1 | Hot Spring | Pakistan | 5 (HQD) | 52.2 | 4023 | 138 | 3.43 | I |
Geobacillus sp. | B23 | Production water, subterranean oil reservoir | Niigata, Japan | 15 (HQD) | 52.3 | 3718 | 138 | 3.71 | I |
G. icigianus | B4113_201601 | Mushroom soup | Netherlands | 8 (HQD) | 51.3 | 4156 | 140 | 3.37 | III |
G. zalihae | NBRC 101842T | Palm oil mill effluent | Malaysia | 12 (HQD) | 51.9 | 3960 | 140 | 3.54 | I |
G. kaustophilus | GBlys | Hot Spring | Japan | 9 (HQD) | 52.1 | 3968 | 143 | 3.60 | I |
Geobacillus sp. | PSS1 | Dead, steaming treesm Puhimae thermal area | Kilauea Volcano, Hawaii | 1 (C) | 52.4 | 3733 | 144 | 3.86 | I |
Geobacillus sp. | C56-T3 | Sandy’s Spring | Nevada, USA | 1 (C) | 52.5 | 3981 | 146 | 3.67 | I |
Geobacillus sp. | CCB_US3_UF5 | Hot Spring | Perak, Malaysia | 1 (C) | 52.3 | 3940 | 148 | 3.76 | I |
G. thermocatelunatus | GS-1 | Oil well | China | 9 (HQD) | 52.1 | 3896 | 150 | 3.85 | I |
G. icigianus | DSM 28325T (G1W1T) | Hot Spring | Baykal, Kamchatka, Russian Fed | 9 (HQD) | 52 | 3877 | 150 | 3.87 | III |
Geobacillus sp. | GHH01 | Botanical garden soil | Hamburg, Germany | 1 (C) | 52.3 | 3947 | 152 | 3.85 | I |
Geobacillus sp. | C56-T2 | Hot Spring | Nevada, USA | 3 (C) | 52.4 | 3854 | 153 | 3.97 | III |
Geobacillus sp. | ZGT-1 | Hot Spring | Jordan | 66 (LQD) | 52.2 | 3894 | 155 | 3.98 | I |
G. jurassicus | WSUCF1 | Compost | Washington, USA | 9 (HQD) | 52.2 | 4142 | 158 | 3.81 | I |
Geobacillus sp. | Et7/4 | Geyser | El Tatio, Chile | 3 (HQD) | 51.7 | 4068 | 158 | 3.88 | I |
Geobacillus sp. | BCO2 | Formation water of oil well | Australia | 13 (HQD) | 52.2 | 5233 | 159 | 3.04 | III |
Geobacillus sp. | Y412MC52 | Hot Spring | Yellowstone National Park, USA | 2 (C) | 52.3 | 4027 | 159 | 3.95 | I |
Geobacillus sp. | DSM 15726T (NBRC 107829) | High-temperature petroleum reservoir | Dagang, China | 13 (HQD) | 52.2 | 3872 | 161 | 4.16 | I |
G. kaustophilus | DSM 7263T (NBRC 102445) | Pasteurized milk | USA | 7 (HQD) | 52 | 3870 | 161 | 4.16 | I |
Geobacillus sp. | T6 | Hot Spring | Argentina | 9 (HQD) | 52 | 4071 | 162 | 3.98 | I |
Geobacillus sp. | CAMR5420 | CAMR thermophile culture collection | University of Bath, UK | 11 (HQD) | 51.9 | 3859 | 162 | 4.20 | I |
Geobacillus sp. | Y4.1MC4 | Hot Spring | Yellowstone Bath, USA | 19 (HQD) | 52.1 | 3765 | 162 | 4.30 | I |
G. thermoleovorans | DSM 5366T (KCTC 3570) | soil near hot water effluent | Pennsylvania, USA | 2 (C) | 52.3 | 3907 | 163 | 4.17 | I |
Geobacillus sp. | JS12 | Compost | Namhae, South Korea | 1 (C) | 52 | 4382 | 165 | 3.77 | I |
Geobacillus sp. | Y412MC61 | Hot Spring | Yellowstone National Park, USA | 2 (C) | 52.3 | 4022 | 166 | 4.13 | I |
G. stearothermophilus | ATCC 12980T | Deteriorated canned corn and beans | USA | 13 (HQD) | 53.1 | 3113 | 120 | 3.85 | II |
G. stearothermophilus | P3 | Milk powder manufacturing plant | New Zealand | 21 (HQD) | 52 | 3703 | 121 | 3.27 | II |
Geobacillus sp. | C1BS50MT1 | water and sediment from Great Artesian Basin gas producing bore well (Below source) | Queensland, Australia | 21 (HQD) | 52.1 | 3721 | 126 | 3.39 | II |
G. stearothermophilus | B4114 | Buttermilk powder | Netherlands | 12 (HQD) | 52.8 | 3176 | 128 | 4.03 | II |
G. stearothermophilus | Sah69 | Hot Spring | Meskoutine, Algeria | 13 (HQD) | 52.6 | 3470 | 132 | 3.80 | II |
G. stearothermophilus | A1 | Milk powder manufacturing plant | New Zealand | 7 (HQD) | 52 | 3677 | 143 | 3.89 | II |
Geobacillus sp. | 12AMOR1 | Marine hydrothermal vent | Troll Wall vent field, Norway | 2 (C) | 52 | 3864 | 147 | 3.80 | II |
Geobacillus sp. | A8 | Deep mine water | Limpopo, South Africa | 10 (HQD) | 52.4 | 3761 | 152 | 4.04 | II |
G. stearothermophilus | B4109 | Pea soup | Netherlands | 13 (HQD) | 52.5 | 3308 | 158 | 4.78 | II |
Geobacillus sp. | 15 | – | Netherlands | 13 (HQD) | 52.4 | 3781 | 159 | 4.21 | II |
G. stearothermophilus | D1 | Milk powder manufacturing plant | New Zealand | 5 (HQD) | 52.2 | 3620 | 159 | 4.39 | II |
G. zalihae | 53 | Hot Spring | Garga, Russian Federation | 15 (HQD) | 52.6 | 3628 | 161 | 4.44 | II |
Geobacillus sp. | LC300 | Surface water, thermophilic bioreactor | USA | 2 (C) | 52.1 | 4111 | 162 | 3.94 | II |
Geobacillus sp. | 22 | Hot Spring | Garga, Russian Federation | 18 (HQD) | 52.6 | 3545 | 163 | 4.60 | II |
Geobacillus sp. | JF8 | Bark compost | Okayama, Japan | 2 (C) | 52.8 | 3791 | 142 | 3.75 | III |
G. thermodenitrificans | PA-3 | Soil | Lithuania | 12 (HQD) | 48.9 | 4027 | 156 | 3.87 | III |
G. thermodenitrificans | NG80-2 | Formation water of oil well | China | 2 (C) | 48.9 | 3945 | 158 | 4.01 | III |
G. thermodenitrificans | DSM 465T | Sugar beet juice | Austria | 12 (HQD) | 49.1 | 3692 | 158 | 4.28 | III |
G. thermodenitrificans | G11MC16 | Grass compost | USA | 8 (HQD) | 48.8 | 3997 | 167 | 4.18 | III |
G. subterraneus | DSM 13552T (KCTC 3922) | Oil field | Liaohe, China | 1 (C) | 52.2 | 3758 | 176 | 4.68 | III |
Parageobacillus sp. | NUB3621 | Soil | China | 1 (C) | 44.4 | 3914 | 131 | 3.35 | IV |
P. toebii | WCH70 | Compost | USA | 3 (HQD) | 42.8 | 3785 | 137 | 3.62 | IV |
P. thermoglucosidasius | Y4.1MC1 | Hot Spring | Yellowstone National Park, USA | 2 (C) | 44 | 4457 | 138 | 3.10 | IV |
P. caldoxylosilyticus | CIC9 | Hot Spring | Indonesia | 6 (HQD) | 44.2 | 4116 | 139 | 3.38 | IV |
P. thermoantarcticus | M1T | Geothermal soil | Antarctica | 9 (HQD) | 43.7 | 3883 | 142 | 3.66 | IV |
P. caldoxylosilyticus | DSM 12041T (NBRC 107762) | Soil | Australia | 14 (HQD) | 43.9 | 4130 | 147 | 3.56 | IV |
P. thermoglucosidasius | C56YS93 | Hot Spring | Obsidian, USA | 3 (C) | 43.9 | 4569 | 148 | 3.24 | IV |
P. toebii | B4110 | Pea soup | Netherlands | 8 (HQD) | 42.2 | 3912 | 148 | 3.78 | IV |
P. caldoxylosilyticus | B4119 | Food | Netherlands | 18 (HQD) | 44 | 4367 | 151 | 3.46 | IV |
P. thermoglucosidasius | YU | Dairy | Netherlands | 24 (HQD) | 43.8 | 4320 | 151 | 3.50 | IV |
P. thermoglucosidasius | TNO09.20 | Dairy factory biofilm | Netherlands | 1 (C) | 43.9 | 4282 | 151 | 3.53 | IV |
P. thermoglucosidasius | M10EXG | Waste compost | Australia | 1 (C) | 43.7 | 4301 | 156 | 3.63 | IV |
P. thermoglucosidasius | B4168 | Dairy processing environment | Netherlands | 17 (HQD) | 43.8 | 4233 | 157 | 3.71 | IV |
P. toebii | DSM 14590T (NBRC 107807) | Hay compost | Korea | 3 (C) | 42.1 | 3580 | 166 | 4.64 | IV |
P. thermoglucosidasius | DSM 2542T | Soil | Kyoto, Japan | 1 (C) | 43.9 | 4354 | 179 | 4.11 | IV |