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Table 3 Oligonucleotide primers used in this study

From: Coupling the recombineering to Cre-lox system enables simplified large-scale genome deletion in Lactobacillus casei

Primer

Sequence (5′–3′)a

Restriction site

H1F

GAAGAAGATCATTTACTCGAG

XhoI

H1R

TACCGTTCGTATAGCATACATTATACGAAGTTATCAGAACGCAAATCTCTTCTA

 

H2F

TGTATGCTATACGAACGGTAGTCGACTTACTTAATGCTATTCATTA

SalI

H2R

TTAAGATCTACATCGAGTTCAGCAAGCTAA

BglII

H3F

ATATGTCGACATTACAGTTACAAGCCATATAC

SalI

H3R

TCAATATTCTTCTCCGTCCC

 

H4F

GGGACGGAGAAGAATATTGAAGATCTCACTGCAGTATATCAGGTAACAAAAAGT

BglII, SalI

H4R

ACATGCATGCTTCCCTCTCCAAATATGCAC

SphI

H5F

CGGGATCCAATAGCTCAGATTTTTAACAACA

BamHI

H5R

TACCGTTCGTATAGCATACATTATACGAAGTTATTAATTTATCAAAAACCTTATTC

 

H6R

CCCAAGCTTGTACATCATACTGTTCATGCC

HindIII

H6F

TGTATGCTATACGAACGGTACTCGAGAAGCCATCGCTGCTAACAAA

XhoI

H7F

TTTTGGCCAAGCTGGTTTT

 

H7R

TTGTTTTTTCGCGGTACTGA

 

H8F

TCAGTACCGCGAAAAAACAAGATCTCACACTCGAGTGTAGTCGATAAAAATT

BglII, XhoI

H8R

GCA ACATGCATGCAGACCATGAGACTATTTCAG

SphI

PrF

TATAGCATACATTATACGAAGTTATCCAGCTAGGCCTAGTGTCCGT

 

PrR

CGTCAATACCTCCTAATTGA

 

galEF

TCAATTAGGAGGTATTGACGATGACAATTGCAGTTTTAGG

 

galER

TTACTCGAGTCAATTCCGGTCACCAAATC

XhoI

catF1

CCGCTCGAGATAACTTCGTATAATGTATGCTATA

XhoI

catR1

CCGCTCGAGATAACTTCGTATAGCATACATTATA

XhoI

catF2

CCGCTCGAGATAACTTCGTATAGCATACATTATACGAACGGTACGAAAGTCGACGGCAATAG

XhoI

catR2

GGAAGATCTCTGTAATATAAAAACCTTCTTC

BglII

  1. aThe restriction sites in the primer sequences are underlined