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Table 2 Genome sequencing and mapping summary

From: An evolutionary optimization of a rhodopsin-based phototrophic metabolism in Escherichia coli

Strain

DNA

Mutation

Average coverage

Reads (trimmed)

×106

Bases (trimmed)

×106

Avg. length (trimmed)

Read mapping rate (%)

Ancestral strain

Chromosome

–

479

13.2

2754

208

99.41

Plasmid

–

58,504

 

ET5

Chromosome

dgcQ C1081A

468

14.2

2980

210

99.50

Plasmid

–

90,534

 
  1. Trim rates based on read numbers were 87.48 and 88.79%, respectively