Table 4 Repetitive element annotation in YYH13, YYH16, and GD12
From: Genomics insights into different cellobiose hydrolysis activities in two Trichoderma hamatum strains
Type | YYH13 | YYH16 | GD12 |
|---|---|---|---|
Repeat length | 571,404 bp | 614,668 bp | 478,638 bp |
% of genome | 1.47% | 1.58% | 1.31% |
DNA transposons | 70,804 bp (0.18%) | 27,383 bp (0.07%) | 54,399 bp (0.15%) |
LINE | 3710 bp (0.01%) | 17,140 bp (0.04%) | 7052 bp (0.02%) |
SINE | 0 bp (0%) | 0 bp (0%) | 0 bp (0%) |
LTR | 43,448 bp (0.11%) | 44,856 bp (0.12%) | 38,856 bp (0.11%) |
Satellites | 7770 bp (0.02%) | 7550 bp (0.02%) | 6257 bp (0.02%) |
Simple repeats | 402,017 bp (1.03%) | 432,358 bp (1.11%) | 324,187 bp (0.88%) |
Low complexity | 78,531 bp (0.20%) | 83,574 bp (0.21%) | 66,153 bp (0.18%) |