Table 2 Genome assembly and annotation statistics of YYH13, YYH16, and GD12
From: Genomics insights into different cellobiose hydrolysis activities in two Trichoderma hamatum strains
YYH13 | YYH16 | GD12 | |
|---|---|---|---|
Scaffolds N50 | 578,201 bp | 41,655 bp | 42,825 bp |
Scaffolds N90 | 113,623 bp | 9276 bp | 10,787 bp |
Number of scaffolds | 608 | 2550 | 1637 |
Contig N50 | 79,575 bp | 9684 bp | 2655 bp |
Contig N90 | 20,512 bp | 177 bp | 1259 bp |
Total size (scaffolds) | 38,930,246 bp | 38,920,148 bp | 36,656,850 bp |
Total size (contig) | 38,928,694 bp | 43,641,621 bp | 37,949,230 bp |
No. of large scaf (>1 kb) | 462 | 1918 | 1609 |
No. of large contig (>1 kb) | 1144 | 7564 | 9830 |
G + C content | 47.19% | 47.93% | 48.28% |
N rate | 0.00% | 0.25% | 0.62% |
Number of CEGs identified | 242 (97.58%) | 241 (97.18%) | 238 (95.97%) |
Total protein coding genes | 11,302 | 11,758 | 11,203 |
Total gene lengths (exon and intron) | 19,416,112 | 18,964,664 | 18,415,061 |
Total exon count | 31,674 | 32,404 | 33,973 |
Average exon length | 542.43 | 518.89 | 457.30 |
Average exon count per gene | 2.80 | 2.76 | 3.03 |
Total introns | 20,372 | 20,646 | 22,770 |
Average intron length | 109.72 | 104.16 | 126.44 |
Average introns per gene | 1.80 | 1.76 | 2.03 |
Average peptide length | 506.27 | 477.38 | 462.27 |