Table 5 A subset of the R. jostii RHA1 most downregulated genes in the MMGln nutrient-deprived medium
Gene ID | RPK RM | RPK MMGln | FoldChange | Protein name |
|---|---|---|---|---|
RHA1_ro04379 | 10,415 | 1519 | 0.146 | Transcriptional regulator, GntR family |
RHA1_ro04433 | 18,405 | 2666 | 0.145 | Hypothetical protein |
RHA1_ro03412 | 1295 | 183 | 0.142 | Hypothetical protein |
RHA1_ro02813 | 65,807 | 9173 | 0.139 | Probable NADP dependent oxidoreductase |
RHA1_ro03320 | 27,980 | 3784 | 0.135 | Pyruvate dehydrogenase E1 component beta subunit |
RHA1_ro04380 | 9371 | 1267 | 0.135 | Probable multidrug resistance transporter, MFS superfamily |
RHA1_ro01994 | 57,602 | 7661 | 0.133 | Probable succinate-semialdehyde dehydrogenase (NAD(P) +) |
RHA1_ro05024 | 76,619 | 10,173 | 0.133 | Reductase |
RHA1_ro03319 | 29,880 | 3927 | 0.131 | Dihydrolipoyllysine-residue acetyltransferase, E2 component of pyruvate dehydrogenase complex |
RHA1_ro03811 | 58,271 | 7458 | 0.128 | Probable carboxylesterase |
RHA1_ro03321 | 39,387 | 4982 | 0.126 | Pyruvate dehydrogenase E1 component alpha subunit |
RHA1_ro06364 | 18,591 | 2126 | 0.114 | Probable cyanate transporter, MFS superfamily |
RHA1_ro03916 | 27,486 | 2996 | 0.109 | Hypothetical protein |
RHA1_ro01380 | 88,898 | 9590 | 0.108 | Hypothetical protein |
RHA1_ro03318 | 48,005 | 5041 | 0.105 | Dihydrolipoyl dehydrogenanse |
RHA1_ro03207 | 21,864 | 1671 | 0.076 | Hypothetical protein |
RHA1_ro03206 | 48,313 | 3638 | 0.075 | Dehydrogenase |
RHA1_ro03208 | 38,493 | 2729 | 0.071 | Polysaccharide deacetylase |
RHA1_ro03923 | 62,548 | 3639 | 0.058 | NADPH dehydrogenase |