Table 3 A subset of the R. jostii RHA1 most upregulated genes in the MMGln nutrient-deprived medium
Gene ID | RPK RM | RPK MMGln | FoldChange | Protein name |
|---|---|---|---|---|
RHA1_ro02363 | 1190 | 144,105 | 121 | Gluconate permease family protein |
RHA1_ro04139 | 1035 | 101,265 | 98 | Metabolite transporter, MFS superfamily |
RHA1_ro06058 | 610 | 57,816 | 95 | Possible ATP-dependent protease |
RHA1_ro06057 | 1465 | 128,281 | 88 | Probable 1,3-propanediol dehydrogenase |
RHA1_ro02362 | 2544 | 203,714 | 80 | Probable gluconokinase |
RHA1_ro02369 | 2036 | 105,557 | 52 | Glucose-6-phosphate 1-dehydrogenase |
RHA1_ro04138 | 1740 | 89,076 | 51 | Possible hydratase |
RHA1_ro02367 | 2703 | 133,001 | 49 | KHG/KDPG aldolase |
RHA1_ro02368 | 2874 | 126,594 | 44 | Phosphogluconate dehydratase |
RHA1_ro06059 | 569 | 22,385 | 39 | Hypothetical protein |
RHA1_ro04137 | 702 | 20,726 | 30 | Reductase |
RHA1_ro04278 | 2020 | 49,893 | 25 | Glucokinase |
RHA1_ro04140 | 3796 | 86,218 | 23 | Probable phosphoglycerate dehydrogenase |
RHA1_ro02361 | 2216 | 49,009 | 22 | Probable lipase |
RHA1_ro03288 | 1117 | 21,311 | 19 | Probable glutamate dehydrogenase (NAD(P) +) |
RHA1_ro04279 | 2964 | 52,890 | 18 | Possible transcriptional regulator, WhiB family |
RHA1_ro03287 | 1634 | 28,443 | 17 | Hypothetical protein |
RHA1_ro06083 | 1756 | 30,473 | 17 | Probable ethanolamine permease, APC superfamily |
RHA1_ro01051 | 1414 | 23,886 | 17 | Hypothetical protein |