Table 2 Secondary structure content in the target proteins estimated using SOPMA
Secondary structure | SpaC (%) | SodC (%) | NanH (%) | PknG (%) |
|---|---|---|---|---|
Alpha helix (Hh) | 111 is 13.94 | 56 is 27.18 | 228 is 32.85 | 330 is 44.06 |
310 helix (Gg) | 0.00 | 0.00 | 0.00 | 0.00 |
Pi helix(Ii) | 0.00 | 0.00 | 0.00 | 0.00 |
Beta bridge (Bb) | 0.00 | 0.00 | 0.00 | 0.00 |
Extended strand (Ee) | 244 is 30.65 | 39 is 18.93 | 128 is 18.44 | 114 is 15.22 |
Beta turn (Tt) | 80 is 10.05 | 26 is 12.62 | 67 is 9.65 | 56 is 7.48 |
Bend region (Ss) | 0.00 | 0.00 | 0.00 | 0.00 |
Random coil (Cc) | 361 is 45.35 | 85 is 41.26 | 271 is 39.05 | 249 is 33.24 |
Ambiguous states (?) | 0.00 | 0.00 | 0.00 | 0.00 |
Other states | 0.00 | 0.00 | 0.00 | 0.00 |